Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13CQ709C8 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13CQ709C8 Z98885.3-201ENST00000624882 1757 ntBASIC11.71□□□□□ -0.54
VPS13CQ709C8 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13CQ709C8 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13CQ709C8 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13CQ709C8 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13CQ709C8 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13CQ709C8 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13CQ709C8 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13CQ709C8 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 AC008494.1-201ENST00000497612 796 ntBASIC11.71□□□□□ -0.54
VPS13CQ709C8 AC140658.4-201ENST00000561990 352 ntBASIC11.71□□□□□ -0.54
VPS13CQ709C8 NDUFB10P1-201ENST00000567319 521 ntBASIC11.71□□□□□ -0.54
VPS13CQ709C8 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13CQ709C8 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13CQ709C8 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 AC126755.5-201ENST00000622756 267 ntBASIC11.7□□□□□ -0.54
VPS13CQ709C8 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 AL354702.1-201ENST00000442006 1960 ntBASIC11.7□□□□□ -0.54
VPS13CQ709C8 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 CASP2-203ENST00000392925 616 ntTSL 3 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 CSTP2-201ENST00000610599 398 ntBASIC11.7□□□□□ -0.54
VPS13CQ709C8 AC026336.4-201ENST00000624565 1050 ntBASIC11.7□□□□□ -0.54
VPS13CQ709C8 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 RN7SL846P-201ENST00000467429 292 ntBASIC11.7□□□□□ -0.54
VPS13CQ709C8 AC091304.3-201ENST00000566500 716 ntBASIC11.7□□□□□ -0.54
VPS13CQ709C8 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 HCG18-241ENST00000602290 821 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 AC087072.1-201ENST00000603727 421 ntBASIC11.7□□□□□ -0.54
VPS13CQ709C8 AC104506.1-201ENST00000609247 429 ntBASIC11.7□□□□□ -0.54
VPS13CQ709C8 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13CQ709C8 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13CQ709C8 AC092115.1-201ENST00000566277 1402 ntBASIC11.7□□□□□ -0.54
VPS13CQ709C8 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
VPS13CQ709C8 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC11.69□□□□□ -0.54
VPS13CQ709C8 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC11.69□□□□□ -0.54
VPS13CQ709C8 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
VPS13CQ709C8 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
VPS13CQ709C8 GPX3-202ENST00000517973 612 ntTSL 3 BASIC11.69□□□□□ -0.54
VPS13CQ709C8 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
VPS13CQ709C8 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC11.69□□□□□ -0.54
VPS13CQ709C8 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
VPS13CQ709C8 ABCC6P1-203ENST00000565566 1170 ntBASIC11.69□□□□□ -0.54
VPS13CQ709C8 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC11.69□□□□□ -0.54
VPS13CQ709C8 MVK-217ENST00000639206 367 ntTSL 5 BASIC11.69□□□□□ -0.54
VPS13CQ709C8 LINC02228-204ENST00000642115 2962 ntBASIC11.69□□□□□ -0.54
VPS13CQ709C8 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
VPS13CQ709C8 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC11.69□□□□□ -0.54
VPS13CQ709C8 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC11.69□□□□□ -0.54
VPS13CQ709C8 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
VPS13CQ709C8 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC11.69□□□□□ -0.54
VPS13CQ709C8 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
VPS13CQ709C8 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
VPS13CQ709C8 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
VPS13CQ709C8 BX679664.3-201ENST00000414070 555 ntBASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms