Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.38■□□□□ 0.21
CCNA1P78396 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCNA1P78396 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
CCNA1P78396 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 LINC00528-201ENST00000600723 2160 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.37■□□□□ 0.21
CCNA1P78396 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
CCNA1P78396 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC16.37■□□□□ 0.21
CCNA1P78396 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.37■□□□□ 0.21
CCNA1P78396 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 ACTG1P19-201ENST00000418987 1116 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC16.37■□□□□ 0.21
CCNA1P78396 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC16.37■□□□□ 0.21
CCNA1P78396 PPP1R2P4-201ENST00000424051 595 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 PPOX-204ENST00000462866 473 ntTSL 5 BASIC16.37■□□□□ 0.21
CCNA1P78396 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC16.37■□□□□ 0.21
CCNA1P78396 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC16.37■□□□□ 0.21
CCNA1P78396 AL021707.6-201ENST00000609212 491 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC16.37■□□□□ 0.21
CCNA1P78396 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC16.37■□□□□ 0.21
CCNA1P78396 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 PPT1-215ENST00000641471 2368 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CCNA1P78396 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CCNA1P78396 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 FAM90A21P-201ENST00000510875 1396 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 FAM90A15P-201ENST00000514465 1395 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 FAM90A6P-201ENST00000515148 1394 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 FAM90A16P-201ENST00000526662 1395 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 FAM90A9P-201ENST00000527940 1395 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 FAM90A5P-201ENST00000528738 1395 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 FAM90A14P-201ENST00000530386 1395 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.37■□□□□ 0.21
CCNA1P78396 FAM90A13P-201ENST00000534703 1395 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 AC132872.4-202ENST00000622924 2756 ntBASIC16.37■□□□□ 0.21
CCNA1P78396 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC16.37■□□□□ 0.21
CCNA1P78396 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCNA1P78396 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.36■□□□□ 0.21
CCNA1P78396 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CCNA1P78396 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CCNA1P78396 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC16.36■□□□□ 0.21
CCNA1P78396 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CCNA1P78396 LINC00265-2P-201ENST00000413372 782 ntBASIC16.36■□□□□ 0.21
CCNA1P78396 BX679664.3-201ENST00000414070 555 ntBASIC16.36■□□□□ 0.21
CCNA1P78396 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 AC113935.1-201ENST00000471722 555 ntBASIC16.36■□□□□ 0.21
CCNA1P78396 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC16.36■□□□□ 0.21
CCNA1P78396 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 GAS7-216ENST00000583882 553 ntTSL 5 BASIC16.36■□□□□ 0.21
CCNA1P78396 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC16.36■□□□□ 0.21
CCNA1P78396 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms