Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 MIR6720-201ENST00000611664 98 ntBASIC15.23■□□□□ 0.03
HDAC4P56524 AL162426.1-201ENST00000624141 743 ntBASIC15.23■□□□□ 0.03
HDAC4P56524 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.23■□□□□ 0.03
HDAC4P56524 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.23■□□□□ 0.03
HDAC4P56524 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
HDAC4P56524 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 HSPA8P5-201ENST00000456928 2069 ntBASIC15.23■□□□□ 0.03
HDAC4P56524 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 AC041040.2-201ENST00000622926 2899 ntBASIC15.22■□□□□ 0.03
HDAC4P56524 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
HDAC4P56524 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 DKFZP434A062-201ENST00000573103 5021 ntBASIC15.22■□□□□ 0.03
HDAC4P56524 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HDAC4P56524 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HDAC4P56524 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HDAC4P56524 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC15.22■□□□□ 0.03
HDAC4P56524 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 Z98259.2-201ENST00000641583 609 ntBASIC15.22■□□□□ 0.03
HDAC4P56524 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.22■□□□□ 0.03
HDAC4P56524 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HDAC4P56524 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
HDAC4P56524 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HDAC4P56524 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HDAC4P56524 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 AL928921.2-201ENST00000641325 2442 ntBASIC15.22■□□□□ 0.03
HDAC4P56524 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDAC4P56524 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC4P56524 AC079781.5-202ENST00000641784 3743 ntBASIC15.21■□□□□ 0.03
HDAC4P56524 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
HDAC4P56524 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
HDAC4P56524 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC4P56524 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
HDAC4P56524 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC4P56524 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 AL008718.2-201ENST00000609206 1313 ntBASIC15.21■□□□□ 0.03
HDAC4P56524 AC064801.2-201ENST00000625052 1303 ntBASIC15.21■□□□□ 0.03
HDAC4P56524 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.21■□□□□ 0.03
HDAC4P56524 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.21■□□□□ 0.03
HDAC4P56524 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
HDAC4P56524 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
HDAC4P56524 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.21■□□□□ 0.03
HDAC4P56524 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
HDAC4P56524 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.21■□□□□ 0.03
HDAC4P56524 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HDAC4P56524 AL161932.2-201ENST00000435436 679 ntBASIC15.21■□□□□ 0.03
HDAC4P56524 GOLGA2P4-201ENST00000441462 777 ntBASIC15.21■□□□□ 0.03
HDAC4P56524 Z93015.1-201ENST00000451718 390 ntBASIC15.21■□□□□ 0.03
HDAC4P56524 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.21■□□□□ 0.03
HDAC4P56524 RPL13AP20-201ENST00000459725 609 ntBASIC15.21■□□□□ 0.03
HDAC4P56524 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
HDAC4P56524 FAM86HP-204ENST00000513466 959 ntBASIC15.21■□□□□ 0.03
HDAC4P56524 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.21■□□□□ 0.03
HDAC4P56524 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms