Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.63■□□□□ 0.09
VCPP55072 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
VCPP55072 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.63■□□□□ 0.09
VCPP55072 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 POM121L8P-201ENST00000417732 1281 ntBASIC15.63■□□□□ 0.09
VCPP55072 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.63■□□□□ 0.09
VCPP55072 AC097065.1-201ENST00000425737 517 ntBASIC15.63■□□□□ 0.09
VCPP55072 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC15.63■□□□□ 0.09
VCPP55072 POM121L9P-203ENST00000441984 1285 ntBASIC15.63■□□□□ 0.09
VCPP55072 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.63■□□□□ 0.09
VCPP55072 TPT1P11-201ENST00000458482 498 ntBASIC15.63■□□□□ 0.09
VCPP55072 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC15.63■□□□□ 0.09
VCPP55072 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
VCPP55072 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.63■□□□□ 0.09
VCPP55072 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC15.63■□□□□ 0.09
VCPP55072 AC026434.2-201ENST00000506094 1078 ntBASIC15.63■□□□□ 0.09
VCPP55072 AC116345.2-201ENST00000512837 523 ntBASIC15.63■□□□□ 0.09
VCPP55072 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC15.63■□□□□ 0.09
VCPP55072 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC15.63■□□□□ 0.09
VCPP55072 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 OR10B1P-201ENST00000601666 907 ntBASIC15.63■□□□□ 0.09
VCPP55072 AP001002.3-201ENST00000623482 206 ntBASIC15.63■□□□□ 0.09
VCPP55072 AC148477.9-201ENST00000623974 539 ntBASIC15.63■□□□□ 0.09
VCPP55072 CDK7-214ENST00000626796 358 ntTSL 5 BASIC15.63■□□□□ 0.09
VCPP55072 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC15.63■□□□□ 0.09
VCPP55072 AL805961.1-203ENST00000641078 1258 ntBASIC15.63■□□□□ 0.09
VCPP55072 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.63■□□□□ 0.09
VCPP55072 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.63■□□□□ 0.09
VCPP55072 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.63■□□□□ 0.09
VCPP55072 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VCPP55072 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
VCPP55072 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.63■□□□□ 0.09
VCPP55072 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.63■□□□□ 0.09
VCPP55072 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
VCPP55072 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
VCPP55072 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.62■□□□□ 0.09
VCPP55072 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
VCPP55072 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.62■□□□□ 0.09
VCPP55072 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 LINC01230-201ENST00000625222 3017 ntBASIC15.62■□□□□ 0.09
VCPP55072 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC15.62■□□□□ 0.09
VCPP55072 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.62■□□□□ 0.09
VCPP55072 FAM8A4P-201ENST00000435433 1213 ntBASIC15.62■□□□□ 0.09
VCPP55072 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC15.62■□□□□ 0.09
VCPP55072 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.62■□□□□ 0.09
VCPP55072 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.62■□□□□ 0.09
VCPP55072 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.62■□□□□ 0.09
VCPP55072 AC092171.5-201ENST00000608012 942 ntBASIC15.62■□□□□ 0.09
VCPP55072 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.62■□□□□ 0.09
VCPP55072 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.62■□□□□ 0.09
VCPP55072 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.62■□□□□ 0.09
VCPP55072 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15.62■□□□□ 0.09
VCPP55072 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VCPP55072 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.62■□□□□ 0.09
VCPP55072 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.62■□□□□ 0.09
VCPP55072 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCPP55072 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.61■□□□□ 0.09
VCPP55072 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCPP55072 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.61■□□□□ 0.09
VCPP55072 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VCPP55072 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCPP55072 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
VCPP55072 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VCPP55072 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms