Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC11.99□□□□□ -0.49
NKX2-1P43699 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC11.99□□□□□ -0.49
NKX2-1P43699 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
NKX2-1P43699 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 AL445209.1-201ENST00000607269 3491 ntBASIC11.98□□□□□ -0.49
NKX2-1P43699 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC11.98□□□□□ -0.49
NKX2-1P43699 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 BEND3P3-201ENST00000611030 2440 ntBASIC11.98□□□□□ -0.49
NKX2-1P43699 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC11.98□□□□□ -0.49
NKX2-1P43699 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 DRD5P1-201ENST00000456605 1438 ntBASIC11.98□□□□□ -0.49
NKX2-1P43699 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC11.98□□□□□ -0.49
NKX2-1P43699 USO1-201ENST00000264904 4135 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 CENPM-205ENST00000404067 905 ntTSL 3 BASIC11.98□□□□□ -0.49
NKX2-1P43699 CENPM-206ENST00000407253 818 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC11.98□□□□□ -0.49
NKX2-1P43699 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC11.98□□□□□ -0.49
NKX2-1P43699 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC11.98□□□□□ -0.49
NKX2-1P43699 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
NKX2-1P43699 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC11.98□□□□□ -0.49
NKX2-1P43699 AC107373.2-201ENST00000607735 490 ntBASIC11.98□□□□□ -0.49
NKX2-1P43699 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC11.98□□□□□ -0.49
NKX2-1P43699 TEX28P1-201ENST00000613479 1221 ntBASIC11.98□□□□□ -0.49
NKX2-1P43699 TEX28P2-201ENST00000617764 1221 ntBASIC11.98□□□□□ -0.49
NKX2-1P43699 AC009093.7-201ENST00000623853 1223 ntBASIC11.98□□□□□ -0.49
NKX2-1P43699 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC11.98□□□□□ -0.49
NKX2-1P43699 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
NKX2-1P43699 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
NKX2-1P43699 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
NKX2-1P43699 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
NKX2-1P43699 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC11.97□□□□□ -0.49
NKX2-1P43699 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 TP73-203ENST00000357733 4899 ntTSL 5 BASIC11.97□□□□□ -0.49
NKX2-1P43699 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
NKX2-1P43699 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC11.97□□□□□ -0.49
NKX2-1P43699 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
NKX2-1P43699 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
NKX2-1P43699 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC11.97□□□□□ -0.49
NKX2-1P43699 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC11.97□□□□□ -0.49
NKX2-1P43699 PCDHB18P-202ENST00000526308 3197 ntBASIC11.97□□□□□ -0.49
NKX2-1P43699 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
NKX2-1P43699 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
NKX2-1P43699 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC11.97□□□□□ -0.49
NKX2-1P43699 KRT18P13-201ENST00000400056 1290 ntBASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms