Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 ZBED1P1-201ENST00000502364 1930 ntBASIC14.39□□□□□ -0.11
CDH3P22223 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH3P22223 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 AC140479.7-201ENST00000636301 2332 ntBASIC14.38□□□□□ -0.11
CDH3P22223 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CDH3P22223 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.38□□□□□ -0.11
CDH3P22223 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 INE2-201ENST00000630399 1874 ntBASIC14.38□□□□□ -0.11
CDH3P22223 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 SALL4P5-201ENST00000419001 1760 ntBASIC14.38□□□□□ -0.11
CDH3P22223 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH3P22223 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.38□□□□□ -0.11
CDH3P22223 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH3P22223 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.38□□□□□ -0.11
CDH3P22223 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.38□□□□□ -0.11
CDH3P22223 AC104306.2-201ENST00000451877 341 ntBASIC14.38□□□□□ -0.11
CDH3P22223 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.38□□□□□ -0.11
CDH3P22223 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.38□□□□□ -0.11
CDH3P22223 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.38□□□□□ -0.11
CDH3P22223 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.38□□□□□ -0.11
CDH3P22223 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC14.38□□□□□ -0.11
CDH3P22223 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.38□□□□□ -0.11
CDH3P22223 MIR4683-201ENST00000579659 81 ntBASIC14.38□□□□□ -0.11
CDH3P22223 AC104982.3-201ENST00000581995 514 ntBASIC14.38□□□□□ -0.11
CDH3P22223 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 AC005695.3-201ENST00000614522 232 ntBASIC14.38□□□□□ -0.11
CDH3P22223 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH3P22223 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH3P22223 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CDH3P22223 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CDH3P22223 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
CDH3P22223 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH3P22223 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH3P22223 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
CDH3P22223 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
CDH3P22223 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.37□□□□□ -0.11
CDH3P22223 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.37□□□□□ -0.11
CDH3P22223 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CDH3P22223 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CDH3P22223 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH3P22223 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.37□□□□□ -0.11
CDH3P22223 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.37□□□□□ -0.11
CDH3P22223 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.37□□□□□ -0.11
CDH3P22223 TLE1P1-201ENST00000422965 589 ntBASIC14.37□□□□□ -0.11
CDH3P22223 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms