Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.3■□□□□ 0.04
APOEP02649 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.3■□□□□ 0.04
APOEP02649 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.3■□□□□ 0.04
APOEP02649 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.3■□□□□ 0.04
APOEP02649 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.3■□□□□ 0.04
APOEP02649 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.3■□□□□ 0.04
APOEP02649 AC104306.2-201ENST00000451877 341 ntBASIC15.3■□□□□ 0.04
APOEP02649 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.3■□□□□ 0.04
APOEP02649 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.3■□□□□ 0.04
APOEP02649 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.3■□□□□ 0.04
APOEP02649 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.3■□□□□ 0.04
APOEP02649 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.3■□□□□ 0.04
APOEP02649 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 AC015688.4-201ENST00000580780 1647 ntBASIC15.3■□□□□ 0.04
APOEP02649 MIR4538-201ENST00000581377 78 ntBASIC15.3■□□□□ 0.04
APOEP02649 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.3■□□□□ 0.04
APOEP02649 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
APOEP02649 AC007663.3-201ENST00000609632 465 ntBASIC15.3■□□□□ 0.04
APOEP02649 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC15.3■□□□□ 0.04
APOEP02649 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.3■□□□□ 0.04
APOEP02649 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
APOEP02649 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
APOEP02649 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 PTENP1-202ENST00000532280 3996 ntBASIC15.29■□□□□ 0.04
APOEP02649 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.29■□□□□ 0.04
APOEP02649 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.29■□□□□ 0.04
APOEP02649 KRT8P29-201ENST00000420409 1371 ntBASIC15.29■□□□□ 0.04
APOEP02649 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
APOEP02649 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.29■□□□□ 0.04
APOEP02649 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 KRTAP10-13P-201ENST00000412914 571 ntBASIC15.29■□□□□ 0.04
APOEP02649 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
APOEP02649 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
APOEP02649 AC005730.2-201ENST00000564549 1184 ntBASIC15.29■□□□□ 0.04
APOEP02649 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.29■□□□□ 0.04
APOEP02649 AL022328.3-201ENST00000607943 679 ntBASIC15.29■□□□□ 0.04
APOEP02649 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.29■□□□□ 0.04
APOEP02649 AL023803.2-201ENST00000620080 638 ntBASIC15.29■□□□□ 0.04
APOEP02649 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.29■□□□□ 0.04
APOEP02649 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
APOEP02649 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.29■□□□□ 0.04
APOEP02649 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC15.29■□□□□ 0.04
APOEP02649 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.29■□□□□ 0.04
APOEP02649 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 AC139712.1-201ENST00000378256 1875 ntBASIC15.29■□□□□ 0.04
APOEP02649 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
APOEP02649 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
APOEP02649 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
APOEP02649 AC005840.4-201ENST00000541242 2494 ntBASIC15.28■□□□□ 0.04
APOEP02649 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 AL590440.2-201ENST00000641973 1595 ntBASIC15.28■□□□□ 0.04
APOEP02649 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
APOEP02649 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.28■□□□□ 0.04
APOEP02649 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 AL354702.1-201ENST00000442006 1960 ntBASIC15.28■□□□□ 0.04
APOEP02649 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 188.5 ms