Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
SPTA1P02549 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.13□□□□□ -0.31
SPTA1P02549 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
SPTA1P02549 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC13.13□□□□□ -0.31
SPTA1P02549 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
SPTA1P02549 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC13.13□□□□□ -0.31
SPTA1P02549 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC13.13□□□□□ -0.31
SPTA1P02549 AC007952.4-201ENST00000573866 637 ntBASIC13.13□□□□□ -0.31
SPTA1P02549 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 AC010976.2-201ENST00000609697 852 ntBASIC13.13□□□□□ -0.31
SPTA1P02549 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
SPTA1P02549 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC13.13□□□□□ -0.31
SPTA1P02549 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.13□□□□□ -0.31
SPTA1P02549 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.13□□□□□ -0.31
SPTA1P02549 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.13□□□□□ -0.31
SPTA1P02549 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.13□□□□□ -0.31
SPTA1P02549 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
SPTA1P02549 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.13□□□□□ -0.31
SPTA1P02549 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.13□□□□□ -0.31
SPTA1P02549 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC13.13□□□□□ -0.31
SPTA1P02549 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.13□□□□□ -0.31
SPTA1P02549 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.13□□□□□ -0.31
SPTA1P02549 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13.13□□□□□ -0.31
SPTA1P02549 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SPTA1P02549 LINC01101-201ENST00000622953 1884 ntBASIC13.12□□□□□ -0.31
SPTA1P02549 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.12□□□□□ -0.31
SPTA1P02549 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.12□□□□□ -0.31
SPTA1P02549 AC073869.2-201ENST00000417338 1026 ntBASIC13.12□□□□□ -0.31
SPTA1P02549 RN7SL582P-201ENST00000491078 279 ntBASIC13.12□□□□□ -0.31
SPTA1P02549 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.12□□□□□ -0.31
SPTA1P02549 SRP14-204ENST00000558720 780 ntTSL 2 BASIC13.12□□□□□ -0.31
SPTA1P02549 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC13.12□□□□□ -0.31
SPTA1P02549 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC13.12□□□□□ -0.31
SPTA1P02549 OR3A1-202ENST00000615105 966 ntBASIC13.12□□□□□ -0.31
SPTA1P02549 AL512324.3-201ENST00000619383 882 ntBASIC13.12□□□□□ -0.31
SPTA1P02549 AC020904.3-201ENST00000624199 442 ntBASIC13.12□□□□□ -0.31
SPTA1P02549 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
SPTA1P02549 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
SPTA1P02549 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.12□□□□□ -0.31
SPTA1P02549 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.12□□□□□ -0.31
SPTA1P02549 HLF-202ENST00000430986 1385 ntTSL 2 BASIC13.12□□□□□ -0.31
SPTA1P02549 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 MIR645-201ENST00000385283 94 ntBASIC13.12□□□□□ -0.31
SPTA1P02549 NME6-208ENST00000435684 599 ntTSL 2 BASIC13.12□□□□□ -0.31
SPTA1P02549 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC13.12□□□□□ -0.31
SPTA1P02549 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC13.12□□□□□ -0.31
SPTA1P02549 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC13.12□□□□□ -0.31
SPTA1P02549 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
SPTA1P02549 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SPTA1P02549 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SPTA1P02549 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.12□□□□□ -0.31
SPTA1P02549 SLC25A30-207ENST00000539591 3608 ntTSL 2 BASIC13.12□□□□□ -0.31
SPTA1P02549 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
SPTA1P02549 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
SPTA1P02549 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
SPTA1P02549 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC13.11□□□□□ -0.31
SPTA1P02549 RGS5-216ENST00000449680 788 ntTSL 3 BASIC13.11□□□□□ -0.31
SPTA1P02549 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC13.11□□□□□ -0.31
SPTA1P02549 OR2A1-AS1-210ENST00000496968 531 ntBASIC13.11□□□□□ -0.31
SPTA1P02549 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms