Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 LINC00469-201ENST00000321800 708 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 AC018635.1-201ENST00000468292 1030 ntBASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 AC079316.1-201ENST00000548397 411 ntBASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 MEG8-217ENST00000556637 924 ntTSL 5 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 AC068620.4-201ENST00000636730 1182 ntBASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 TCAM1P-207ENST00000485295 1537 ntBASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 AC136759.1-202ENST00000530858 2194 ntBASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 SNX18-202ENST00000343017 3140 ntBASIC14.64□□□□□ -0.07
VPS9D1Q9Y2B5 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AC112492.5-201ENST00000421897 457 ntBASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 TMEM14DP-201ENST00000422205 345 ntBASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AL355994.2-201ENST00000447882 704 ntBASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AC005534.1-201ENST00000455709 742 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AC114947.1-201ENST00000511991 432 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AC078819.1-201ENST00000547454 765 ntBASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AC012085.1-201ENST00000548270 765 ntBASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AC027237.1-201ENST00000560942 655 ntBASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 RHOXF1P1-202ENST00000635473 501 ntBASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 AHCYP2-201ENST00000430630 1300 ntBASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
VPS9D1Q9Y2B5 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms