Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 AC091804.1-201ENST00000486888 567 ntBASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 SNX12-206ENST00000622259 661 ntTSL 5 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 WASH3P-207ENST00000560956 1394 ntBASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 AC020910.5-201ENST00000623668 1865 ntBASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 CSH2-202ENST00000345366 598 ntTSL 5 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 RN7SKP175-201ENST00000408472 289 ntBASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 SCARNA20.5-201ENST00000516991 142 ntBASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 AL139099.5-201ENST00000635274 300 ntBASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 AC011840.2-201ENST00000563063 1520 ntBASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 LINC00528-201ENST00000600723 2160 ntBASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms