Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 MYADML-201ENST00000474610 2147 ntBASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 AL137784.3-201ENST00000623858 2288 ntBASIC17.44■□□□□ 0.38
CHMP4CQ96CF2 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 AP001267.2-201ENST00000532619 2086 ntBASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 ZACNP1-201ENST00000612259 710 ntBASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP4CQ96CF2 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 AC006033.1-201ENST00000440505 426 ntBASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 AC138696.2-201ENST00000607376 223 ntBASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms