Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.07□□□□□ -0.32
CLRN1P58418 AL590440.2-201ENST00000641973 1595 ntBASIC13.07□□□□□ -0.32
CLRN1P58418 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CLRN1P58418 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
CLRN1P58418 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.07□□□□□ -0.32
CLRN1P58418 RPL7P3-201ENST00000441388 714 ntBASIC13.07□□□□□ -0.32
CLRN1P58418 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 GAPDHP21-201ENST00000450301 1010 ntBASIC13.07□□□□□ -0.32
CLRN1P58418 AL035414.1-201ENST00000451327 857 ntBASIC13.07□□□□□ -0.32
CLRN1P58418 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 KRT17P8-201ENST00000540749 863 ntBASIC13.07□□□□□ -0.32
CLRN1P58418 RBM7-207ENST00000544582 692 ntTSL 3 BASIC13.07□□□□□ -0.32
CLRN1P58418 AC079316.1-201ENST00000548397 411 ntBASIC13.07□□□□□ -0.32
CLRN1P58418 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.07□□□□□ -0.32
CLRN1P58418 PPY2P-201ENST00000582808 702 ntBASIC13.07□□□□□ -0.32
CLRN1P58418 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 AL136301.1-201ENST00000615830 422 ntBASIC13.07□□□□□ -0.32
CLRN1P58418 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
CLRN1P58418 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CLRN1P58418 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 AC012617.1-204ENST00000586340 2305 ntBASIC13.07□□□□□ -0.32
CLRN1P58418 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.07□□□□□ -0.32
CLRN1P58418 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.07□□□□□ -0.32
CLRN1P58418 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLRN1P58418 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.07□□□□□ -0.32
CLRN1P58418 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.06□□□□□ -0.32
CLRN1P58418 AC011498.7-201ENST00000624986 2027 ntBASIC13.06□□□□□ -0.32
CLRN1P58418 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CLRN1P58418 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CLRN1P58418 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.06□□□□□ -0.32
CLRN1P58418 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 AC005034.1-201ENST00000426657 489 ntBASIC13.06□□□□□ -0.32
CLRN1P58418 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC13.06□□□□□ -0.32
CLRN1P58418 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.06□□□□□ -0.32
CLRN1P58418 HOMER2P2-201ENST00000451621 847 ntBASIC13.06□□□□□ -0.32
CLRN1P58418 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.06□□□□□ -0.32
CLRN1P58418 CTBP2P5-201ENST00000454986 1264 ntBASIC13.06□□□□□ -0.32
CLRN1P58418 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
CLRN1P58418 AP000812.2-201ENST00000538934 718 ntBASIC13.06□□□□□ -0.32
CLRN1P58418 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.06□□□□□ -0.32
CLRN1P58418 AC023310.1-201ENST00000554836 735 ntBASIC13.06□□□□□ -0.32
CLRN1P58418 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.06□□□□□ -0.32
CLRN1P58418 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 SORD2P-201ENST00000558556 1069 ntBASIC13.06□□□□□ -0.32
CLRN1P58418 RAB43P1-201ENST00000561790 589 ntBASIC13.06□□□□□ -0.32
CLRN1P58418 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
CLRN1P58418 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.06□□□□□ -0.32
CLRN1P58418 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLRN1P58418 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CLRN1P58418 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms