Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
LIMK1P53667 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LIMK1P53667 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LIMK1P53667 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.11
LIMK1P53667 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.33□□□□□ -0.11
LIMK1P53667 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.33□□□□□ -0.11
LIMK1P53667 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LIMK1P53667 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LIMK1P53667 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LIMK1P53667 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC14.33□□□□□ -0.11
LIMK1P53667 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.33□□□□□ -0.11
LIMK1P53667 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.33□□□□□ -0.11
LIMK1P53667 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.33□□□□□ -0.11
LIMK1P53667 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LIMK1P53667 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
LIMK1P53667 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.33□□□□□ -0.12
LIMK1P53667 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LIMK1P53667 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LIMK1P53667 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 RNA5SP359-201ENST00000364838 113 ntBASIC14.33□□□□□ -0.12
LIMK1P53667 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LIMK1P53667 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC14.33□□□□□ -0.12
LIMK1P53667 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
LIMK1P53667 GUSBP10-201ENST00000417412 665 ntBASIC14.33□□□□□ -0.12
LIMK1P53667 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC14.33□□□□□ -0.12
LIMK1P53667 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.33□□□□□ -0.12
LIMK1P53667 CICP12-201ENST00000455801 843 ntBASIC14.33□□□□□ -0.12
LIMK1P53667 AC244197.1-201ENST00000456494 951 ntBASIC14.33□□□□□ -0.12
LIMK1P53667 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 AC138701.2-201ENST00000553634 226 ntBASIC14.33□□□□□ -0.12
LIMK1P53667 NAMA-206ENST00000605377 509 ntTSL 5 BASIC14.33□□□□□ -0.12
LIMK1P53667 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.33□□□□□ -0.12
LIMK1P53667 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.33□□□□□ -0.12
LIMK1P53667 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.33□□□□□ -0.12
LIMK1P53667 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.12
LIMK1P53667 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
LIMK1P53667 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
LIMK1P53667 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LIMK1P53667 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIMK1P53667 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.32□□□□□ -0.12
LIMK1P53667 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.32□□□□□ -0.12
LIMK1P53667 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.32□□□□□ -0.12
LIMK1P53667 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.32□□□□□ -0.12
LIMK1P53667 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
LIMK1P53667 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 SERBP1P2-201ENST00000436888 1164 ntBASIC14.32□□□□□ -0.12
LIMK1P53667 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC14.32□□□□□ -0.12
LIMK1P53667 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC14.32□□□□□ -0.12
LIMK1P53667 RNA5SP417-201ENST00000516459 108 ntBASIC14.32□□□□□ -0.12
LIMK1P53667 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC14.32□□□□□ -0.12
LIMK1P53667 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC14.32□□□□□ -0.12
LIMK1P53667 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC14.32□□□□□ -0.12
LIMK1P53667 BX088702.1-201ENST00000610784 235 ntBASIC14.32□□□□□ -0.12
LIMK1P53667 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC14.32□□□□□ -0.12
LIMK1P53667 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.32□□□□□ -0.12
LIMK1P53667 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LIMK1P53667 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 AHCYP4-201ENST00000419201 1315 ntBASIC14.32□□□□□ -0.12
LIMK1P53667 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
LIMK1P53667 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
LIMK1P53667 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIMK1P53667 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.32□□□□□ -0.12
LIMK1P53667 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms