Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
SOX3P41225 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.8□□□□□ -0.2
SOX3P41225 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.8□□□□□ -0.2
SOX3P41225 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 AP000593.2-201ENST00000542775 1433 ntBASIC13.8□□□□□ -0.2
SOX3P41225 AC015802.1-201ENST00000588104 1449 ntBASIC13.8□□□□□ -0.2
SOX3P41225 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.8□□□□□ -0.2
SOX3P41225 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX3P41225 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.8□□□□□ -0.2
SOX3P41225 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SOX3P41225 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 AL359881.3-201ENST00000602640 1721 ntBASIC13.79□□□□□ -0.2
SOX3P41225 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SOX3P41225 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.79□□□□□ -0.2
SOX3P41225 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 AC020910.5-201ENST00000623668 1865 ntBASIC13.79□□□□□ -0.2
SOX3P41225 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
SOX3P41225 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 BTBD6P1-201ENST00000412176 1267 ntBASIC13.79□□□□□ -0.2
SOX3P41225 AC004945.1-201ENST00000416738 983 ntBASIC13.79□□□□□ -0.2
SOX3P41225 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.79□□□□□ -0.2
SOX3P41225 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.79□□□□□ -0.2
SOX3P41225 GOLGA2P4-201ENST00000441462 777 ntBASIC13.79□□□□□ -0.2
SOX3P41225 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
SOX3P41225 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.79□□□□□ -0.2
SOX3P41225 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.79□□□□□ -0.2
SOX3P41225 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.79□□□□□ -0.2
SOX3P41225 AC138696.2-201ENST00000607376 223 ntBASIC13.79□□□□□ -0.2
SOX3P41225 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.79□□□□□ -0.2
SOX3P41225 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.79□□□□□ -0.2
SOX3P41225 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SOX3P41225 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
SOX3P41225 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX3P41225 AC015818.8-201ENST00000587907 1519 ntBASIC13.79□□□□□ -0.2
SOX3P41225 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX3P41225 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
SOX3P41225 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.78□□□□□ -0.2
SOX3P41225 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX3P41225 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SOX3P41225 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms