Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 AL731571.1-201ENST00000617058 5428 ntBASIC11.18□□□□□ -0.62
HLA-DMBP28068 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 CICP17-201ENST00000418553 2377 ntBASIC11.18□□□□□ -0.62
HLA-DMBP28068 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
HLA-DMBP28068 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 CLUHP2-201ENST00000426660 1303 ntBASIC11.17□□□□□ -0.62
HLA-DMBP28068 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 NSL1-201ENST00000366976 722 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 PGGT1BP2-201ENST00000398621 1028 ntBASIC11.17□□□□□ -0.62
HLA-DMBP28068 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AC007389.4-201ENST00000454674 793 ntBASIC11.17□□□□□ -0.62
HLA-DMBP28068 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AP001063.1-201ENST00000568332 529 ntBASIC11.17□□□□□ -0.62
HLA-DMBP28068 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC11.17□□□□□ -0.62
HLA-DMBP28068 AL008721.1-201ENST00000609964 604 ntBASIC11.17□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms