Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC15.33■□□□□ 0.04
BDNFP23560 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC15.33■□□□□ 0.04
BDNFP23560 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC15.33■□□□□ 0.04
BDNFP23560 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.33■□□□□ 0.04
BDNFP23560 AC073150.1-201ENST00000450406 1084 ntBASIC15.33■□□□□ 0.04
BDNFP23560 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 IMP3P2-201ENST00000489760 475 ntBASIC15.33■□□□□ 0.04
BDNFP23560 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC15.33■□□□□ 0.04
BDNFP23560 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.33■□□□□ 0.04
BDNFP23560 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.33■□□□□ 0.04
BDNFP23560 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.33■□□□□ 0.04
BDNFP23560 AC005586.2-201ENST00000563946 837 ntBASIC15.33■□□□□ 0.04
BDNFP23560 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.33■□□□□ 0.04
BDNFP23560 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC15.33■□□□□ 0.04
BDNFP23560 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.33■□□□□ 0.04
BDNFP23560 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC15.33■□□□□ 0.04
BDNFP23560 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.33■□□□□ 0.04
BDNFP23560 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
BDNFP23560 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
BDNFP23560 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.33■□□□□ 0.04
BDNFP23560 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
BDNFP23560 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
BDNFP23560 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 SNX18-202ENST00000343017 3140 ntBASIC15.32■□□□□ 0.04
BDNFP23560 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
BDNFP23560 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 AL009178.2-201ENST00000597278 2719 ntBASIC15.32■□□□□ 0.04
BDNFP23560 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 NCR3-202ENST00000376071 541 ntTSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 AC006335.1-201ENST00000445200 547 ntBASIC15.32■□□□□ 0.04
BDNFP23560 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC15.32■□□□□ 0.04
BDNFP23560 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 UPF3AP2-201ENST00000457924 1132 ntBASIC15.32■□□□□ 0.04
BDNFP23560 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 AF254983.2-201ENST00000612331 135 ntBASIC15.32■□□□□ 0.04
BDNFP23560 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 AC011498.7-201ENST00000624986 2027 ntBASIC15.32■□□□□ 0.04
BDNFP23560 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.32■□□□□ 0.04
BDNFP23560 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
BDNFP23560 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BDNFP23560 LINC01165-201ENST00000445190 1623 ntBASIC15.32■□□□□ 0.04
BDNFP23560 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.32■□□□□ 0.04
BDNFP23560 LINC00552-201ENST00000625151 2579 ntBASIC15.31■□□□□ 0.04
BDNFP23560 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
BDNFP23560 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.31■□□□□ 0.04
BDNFP23560 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.31■□□□□ 0.04
BDNFP23560 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
BDNFP23560 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms