Protein–RNA interactions for Protein: O00370

LINE-1 retrotransposable element ORF2 protein, humanhuman

Predictions only

Length 1,275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
O00370 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
O00370 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
O00370 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
O00370 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
O00370 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC15.55■□□□□ 0.08
O00370 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.55■□□□□ 0.08
O00370 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
O00370 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
O00370 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 AC090505.1-201ENST00000430515 1834 ntBASIC15.55■□□□□ 0.08
O00370 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC15.55■□□□□ 0.08
O00370 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.55■□□□□ 0.08
O00370 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.55■□□□□ 0.08
O00370 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.55■□□□□ 0.08
O00370 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.55■□□□□ 0.08
O00370 MIR663B-201ENST00000408361 115 ntBASIC15.55■□□□□ 0.08
O00370 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.55■□□□□ 0.08
O00370 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.55■□□□□ 0.08
O00370 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.55■□□□□ 0.08
O00370 AL157407.1-201ENST00000435784 904 ntBASIC15.55■□□□□ 0.08
O00370 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.55■□□□□ 0.08
O00370 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 SORD2P-201ENST00000558556 1069 ntBASIC15.55■□□□□ 0.08
O00370 AC005730.2-201ENST00000564549 1184 ntBASIC15.55■□□□□ 0.08
O00370 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.55■□□□□ 0.08
O00370 MIR6720-201ENST00000611664 98 ntBASIC15.55■□□□□ 0.08
O00370 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.55■□□□□ 0.08
O00370 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
O00370 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC15.55■□□□□ 0.08
O00370 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.55■□□□□ 0.08
O00370 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.55■□□□□ 0.08
O00370 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC15.55■□□□□ 0.08
O00370 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
O00370 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
O00370 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.55■□□□□ 0.08
O00370 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
O00370 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 RN7SL832P-201ENST00000607781 1756 ntBASIC15.54■□□□□ 0.08
O00370 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
O00370 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
O00370 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 TMBIM7P-202ENST00000641474 1516 ntBASIC15.54■□□□□ 0.08
O00370 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.54■□□□□ 0.08
O00370 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
O00370 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.54■□□□□ 0.08
O00370 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.54■□□□□ 0.08
O00370 AL591846.1-201ENST00000451736 433 ntBASIC15.54■□□□□ 0.08
O00370 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.54■□□□□ 0.08
O00370 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.54■□□□□ 0.08
O00370 AC027237.1-201ENST00000560942 655 ntBASIC15.54■□□□□ 0.08
O00370 AC100827.2-201ENST00000563214 1194 ntBASIC15.54■□□□□ 0.08
O00370 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 AC005695.3-201ENST00000614522 232 ntBASIC15.54■□□□□ 0.08
O00370 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
O00370 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.54■□□□□ 0.08
O00370 Z98259.2-201ENST00000641583 609 ntBASIC15.54■□□□□ 0.08
O00370 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.54■□□□□ 0.08
O00370 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.54■□□□□ 0.08
O00370 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC15.54■□□□□ 0.08
O00370 APP-205ENST00000358918 2366 ntTSL 5 BASIC15.54■□□□□ 0.08
O00370 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
O00370 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms