Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
UPK1AO00322 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
UPK1AO00322 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
UPK1AO00322 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC13.83□□□□□ -0.2
UPK1AO00322 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
UPK1AO00322 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
UPK1AO00322 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.2
UPK1AO00322 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
UPK1AO00322 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
UPK1AO00322 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
UPK1AO00322 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
UPK1AO00322 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.83□□□□□ -0.2
UPK1AO00322 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
UPK1AO00322 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
UPK1AO00322 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
UPK1AO00322 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
UPK1AO00322 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.83□□□□□ -0.2
UPK1AO00322 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
UPK1AO00322 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 AL157996.1-201ENST00000624684 2299 ntBASIC13.82□□□□□ -0.2
UPK1AO00322 AL354989.2-201ENST00000435838 1540 ntBASIC13.82□□□□□ -0.2
UPK1AO00322 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.82□□□□□ -0.2
UPK1AO00322 PUDPP3-201ENST00000445368 636 ntBASIC13.82□□□□□ -0.2
UPK1AO00322 GAPDHP21-201ENST00000450301 1010 ntBASIC13.82□□□□□ -0.2
UPK1AO00322 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 CROCCP4-201ENST00000457096 498 ntBASIC13.82□□□□□ -0.2
UPK1AO00322 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.82□□□□□ -0.2
UPK1AO00322 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.82□□□□□ -0.2
UPK1AO00322 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.82□□□□□ -0.2
UPK1AO00322 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
UPK1AO00322 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.82□□□□□ -0.2
UPK1AO00322 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 MIR6074-201ENST00000612054 107 ntBASIC13.82□□□□□ -0.2
UPK1AO00322 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC13.82□□□□□ -0.2
UPK1AO00322 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
UPK1AO00322 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.82□□□□□ -0.2
UPK1AO00322 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC13.81□□□□□ -0.2
UPK1AO00322 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.81□□□□□ -0.2
UPK1AO00322 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
UPK1AO00322 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
UPK1AO00322 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC13.81□□□□□ -0.2
UPK1AO00322 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.81□□□□□ -0.2
UPK1AO00322 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
UPK1AO00322 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.81□□□□□ -0.2
UPK1AO00322 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.81□□□□□ -0.2
UPK1AO00322 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
UPK1AO00322 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms