Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 AGAP12P-201ENST00000585227 2359 ntBASIC14.39□□□□□ -0.11
MKS1Q9NXB0 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 AL391825.1-201ENST00000457671 1364 ntBASIC14.39□□□□□ -0.11
MKS1Q9NXB0 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC14.39□□□□□ -0.11
MKS1Q9NXB0 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.38□□□□□ -0.11
MKS1Q9NXB0 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 AL691403.2-201ENST00000618460 490 ntBASIC14.38□□□□□ -0.11
MKS1Q9NXB0 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 AL138709.1-201ENST00000614840 1693 ntBASIC14.38□□□□□ -0.11
MKS1Q9NXB0 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.38□□□□□ -0.11
MKS1Q9NXB0 AC024075.2-201ENST00000598112 1473 ntBASIC14.38□□□□□ -0.11
MKS1Q9NXB0 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms