Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 AL354702.1-201ENST00000442006 1960 ntBASIC23.15■■□□□ 1.3
IFT140Q96RY7 AC018442.1-201ENST00000421439 2061 ntBASIC23.15■■□□□ 1.3
IFT140Q96RY7 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
IFT140Q96RY7 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
IFT140Q96RY7 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
IFT140Q96RY7 AL591499.1-201ENST00000307155 1153 ntBASIC23.15■■□□□ 1.3
IFT140Q96RY7 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
IFT140Q96RY7 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
IFT140Q96RY7 AC005722.1-201ENST00000431878 964 ntBASIC23.15■■□□□ 1.3
IFT140Q96RY7 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
IFT140Q96RY7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
IFT140Q96RY7 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
IFT140Q96RY7 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 AL391005.1-201ENST00000623953 2435 ntBASIC23.15■■□□□ 1.3
IFT140Q96RY7 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
IFT140Q96RY7 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
IFT140Q96RY7 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC23.15■■□□□ 1.3
IFT140Q96RY7 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
IFT140Q96RY7 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
IFT140Q96RY7 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
IFT140Q96RY7 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC23.14■■□□□ 1.3
IFT140Q96RY7 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
IFT140Q96RY7 AC068760.1-201ENST00000493579 1953 ntBASIC23.14■■□□□ 1.3
IFT140Q96RY7 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
IFT140Q96RY7 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC23.14■■□□□ 1.3
IFT140Q96RY7 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
IFT140Q96RY7 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC23.14■■□□□ 1.29
IFT140Q96RY7 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
IFT140Q96RY7 CA5BP1-205ENST00000435806 1064 ntBASIC23.14■■□□□ 1.29
IFT140Q96RY7 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC23.14■■□□□ 1.29
IFT140Q96RY7 PCTP-206ENST00000573500 919 ntTSL 3 BASIC23.14■■□□□ 1.29
IFT140Q96RY7 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
IFT140Q96RY7 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.29
IFT140Q96RY7 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
IFT140Q96RY7 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
IFT140Q96RY7 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC23.14■■□□□ 1.29
IFT140Q96RY7 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
IFT140Q96RY7 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC23.14■■□□□ 1.29
IFT140Q96RY7 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
IFT140Q96RY7 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
IFT140Q96RY7 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
IFT140Q96RY7 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
IFT140Q96RY7 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC23.13■■□□□ 1.29
IFT140Q96RY7 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
IFT140Q96RY7 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
IFT140Q96RY7 AC148476.1-201ENST00000622182 705 ntBASIC23.13■■□□□ 1.29
IFT140Q96RY7 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC23.13■■□□□ 1.29
IFT140Q96RY7 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
IFT140Q96RY7 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
IFT140Q96RY7 AL031590.1-202ENST00000641466 1737 ntBASIC23.13■■□□□ 1.29
IFT140Q96RY7 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
IFT140Q96RY7 HLA-DQB2-231ENST00000435145 2026 ntBASIC23.13■■□□□ 1.29
IFT140Q96RY7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
IFT140Q96RY7 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
IFT140Q96RY7 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
IFT140Q96RY7 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
IFT140Q96RY7 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
IFT140Q96RY7 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC23.12■■□□□ 1.29
IFT140Q96RY7 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC23.12■■□□□ 1.29
IFT140Q96RY7 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC23.12■■□□□ 1.29
IFT140Q96RY7 NDUFB2P1-201ENST00000506966 295 ntBASIC23.12■■□□□ 1.29
IFT140Q96RY7 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
IFT140Q96RY7 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
IFT140Q96RY7 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC23.12■■□□□ 1.29
IFT140Q96RY7 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
IFT140Q96RY7 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
IFT140Q96RY7 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
IFT140Q96RY7 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
IFT140Q96RY7 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
IFT140Q96RY7 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
IFT140Q96RY7 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC23.12■■□□□ 1.29
IFT140Q96RY7 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC23.12■■□□□ 1.29
IFT140Q96RY7 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
IFT140Q96RY7 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 SRP9P1-201ENST00000445874 261 ntBASIC23.11■■□□□ 1.29
IFT140Q96RY7 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 STK16-202ENST00000409260 1493 ntTSL 5 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
IFT140Q96RY7 AC011477.7-201ENST00000617163 1440 ntBASIC23.11■■□□□ 1.29
IFT140Q96RY7 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
IFT140Q96RY7 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
IFT140Q96RY7 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
IFT140Q96RY7 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC23.11■■□□□ 1.29
IFT140Q96RY7 WDR54-202ENST00000409791 854 ntTSL 3 BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms