Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
HLA-CQ95604 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
HLA-CQ95604 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
HLA-CQ95604 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.83□□□□□ -0.04
HLA-CQ95604 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.83□□□□□ -0.04
HLA-CQ95604 PDXDC2P-206ENST00000534700 1315 ntBASIC14.83□□□□□ -0.04
HLA-CQ95604 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
HLA-CQ95604 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-CQ95604 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-CQ95604 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HLA-CQ95604 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HLA-CQ95604 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-CQ95604 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.83□□□□□ -0.04
HLA-CQ95604 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-CQ95604 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.83□□□□□ -0.04
HLA-CQ95604 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-CQ95604 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-CQ95604 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-CQ95604 PRAL-201ENST00000624952 3286 ntBASIC14.83□□□□□ -0.04
HLA-CQ95604 AC007952.5-201ENST00000572818 1486 ntBASIC14.82□□□□□ -0.04
HLA-CQ95604 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HLA-CQ95604 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HLA-CQ95604 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 FLJ16779-201ENST00000612722 7638 ntBASIC14.82□□□□□ -0.04
HLA-CQ95604 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 AC080080.1-201ENST00000625121 2420 ntBASIC14.82□□□□□ -0.04
HLA-CQ95604 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 CCDC152-202ENST00000388827 1237 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 AL139353.2-202ENST00000502430 1213 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 AC093300.1-201ENST00000510368 1201 ntBASIC14.82□□□□□ -0.04
HLA-CQ95604 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-CQ95604 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 BMF-206ENST00000558774 671 ntTSL 3 BASIC14.82□□□□□ -0.04
HLA-CQ95604 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC14.82□□□□□ -0.04
HLA-CQ95604 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC14.82□□□□□ -0.04
HLA-CQ95604 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 HPX-213ENST00000615166 826 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-CQ95604 AC048382.6-201ENST00000621980 1223 ntBASIC14.82□□□□□ -0.04
HLA-CQ95604 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC14.82□□□□□ -0.04
HLA-CQ95604 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
HLA-CQ95604 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-CQ95604 AC020931.1-201ENST00000589622 1346 ntBASIC14.82□□□□□ -0.04
HLA-CQ95604 KHSRPP1-201ENST00000427983 1768 ntBASIC14.82□□□□□ -0.04
HLA-CQ95604 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-CQ95604 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HLA-CQ95604 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-CQ95604 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-CQ95604 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-CQ95604 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HLA-CQ95604 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-CQ95604 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-CQ95604 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-CQ95604 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC14.81□□□□□ -0.04
HLA-CQ95604 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-CQ95604 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-CQ95604 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-CQ95604 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-CQ95604 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-CQ95604 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-CQ95604 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-CQ95604 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
HLA-CQ95604 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-CQ95604 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-CQ95604 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-CQ95604 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-CQ95604 HDGF-202ENST00000368206 960 ntTSL 5 BASIC14.81□□□□□ -0.04
HLA-CQ95604 HNRNPA1P21-201ENST00000424115 961 ntBASIC14.81□□□□□ -0.04
HLA-CQ95604 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC14.81□□□□□ -0.04
HLA-CQ95604 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC14.81□□□□□ -0.04
HLA-CQ95604 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-CQ95604 ISL1-203ENST00000511384 981 ntTSL 5 BASIC14.81□□□□□ -0.04
HLA-CQ95604 AC090820.1-201ENST00000519722 591 ntBASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms