Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 NCLP1-201ENST00000445357 1963 ntBASIC16.62■□□□□ 0.25
ATL3Q6DD88 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 AL022328.1-201ENST00000610050 478 ntBASIC16.62■□□□□ 0.25
ATL3Q6DD88 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ATL3Q6DD88 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.62■□□□□ 0.25
ATL3Q6DD88 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 AL365209.1-201ENST00000624418 6473 ntBASIC16.61■□□□□ 0.25
ATL3Q6DD88 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 REXO1L6P-201ENST00000603433 1515 ntBASIC16.61■□□□□ 0.25
ATL3Q6DD88 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 AC016694.1-201ENST00000434179 700 ntBASIC16.61■□□□□ 0.25
ATL3Q6DD88 AL590640.2-201ENST00000457038 527 ntBASIC16.61■□□□□ 0.25
ATL3Q6DD88 KRT18P15-201ENST00000458108 1291 ntBASIC16.61■□□□□ 0.25
ATL3Q6DD88 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 USP32P1-208ENST00000506594 1164 ntBASIC16.61■□□□□ 0.25
ATL3Q6DD88 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATL3Q6DD88 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.61■□□□□ 0.25
ATL3Q6DD88 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 FUK-202ENST00000378912 3925 ntTSL 2 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 SHC1P1-201ENST00000425230 1745 ntBASIC16.6■□□□□ 0.25
ATL3Q6DD88 MARK2P9-201ENST00000430958 1727 ntBASIC16.6■□□□□ 0.25
ATL3Q6DD88 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms