Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SCARNA20.5-201ENST00000516991 142 ntBASIC13.53□□□□□ -0.24
RNF4P78317 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.53□□□□□ -0.24
RNF4P78317 SNORD3B-2-202ENST00000571722 791 ntBASIC13.53□□□□□ -0.24
RNF4P78317 AC103810.3-201ENST00000583567 96 ntBASIC13.53□□□□□ -0.24
RNF4P78317 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.53□□□□□ -0.24
RNF4P78317 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.53□□□□□ -0.24
RNF4P78317 AC133540.1-201ENST00000620845 1019 ntBASIC13.53□□□□□ -0.24
RNF4P78317 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.53□□□□□ -0.24
RNF4P78317 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.53□□□□□ -0.24
RNF4P78317 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.53□□□□□ -0.24
RNF4P78317 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
RNF4P78317 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.53□□□□□ -0.24
RNF4P78317 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
RNF4P78317 CYP4F23P-201ENST00000593402 1579 ntBASIC13.53□□□□□ -0.24
RNF4P78317 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
RNF4P78317 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.52□□□□□ -0.24
RNF4P78317 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.52□□□□□ -0.24
RNF4P78317 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
RNF4P78317 AC232323.1-201ENST00000540724 2099 ntBASIC13.52□□□□□ -0.24
RNF4P78317 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
RNF4P78317 AC015656.1-201ENST00000624209 3578 ntBASIC13.52□□□□□ -0.24
RNF4P78317 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
RNF4P78317 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
RNF4P78317 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
RNF4P78317 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
RNF4P78317 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
RNF4P78317 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
RNF4P78317 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
RNF4P78317 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.52□□□□□ -0.24
RNF4P78317 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
RNF4P78317 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
RNF4P78317 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
RNF4P78317 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
RNF4P78317 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 FNTAP2-201ENST00000430308 634 ntBASIC13.52□□□□□ -0.25
RNF4P78317 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 BX284668.4-201ENST00000453917 508 ntBASIC13.52□□□□□ -0.25
RNF4P78317 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.52□□□□□ -0.25
RNF4P78317 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 MARK2P5-201ENST00000507649 634 ntBASIC13.52□□□□□ -0.25
RNF4P78317 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC13.52□□□□□ -0.25
RNF4P78317 NOP2-211ENST00000540228 668 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.52□□□□□ -0.25
RNF4P78317 SORD2P-201ENST00000558556 1069 ntBASIC13.52□□□□□ -0.25
RNF4P78317 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.52□□□□□ -0.25
RNF4P78317 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 MIR6074-201ENST00000612054 107 ntBASIC13.52□□□□□ -0.25
RNF4P78317 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.52□□□□□ -0.25
RNF4P78317 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
RNF4P78317 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
RNF4P78317 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
RNF4P78317 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 LINC00552-201ENST00000625151 2579 ntBASIC13.52□□□□□ -0.25
RNF4P78317 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
RNF4P78317 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.52□□□□□ -0.25
RNF4P78317 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RNF4P78317 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.52□□□□□ -0.25
RNF4P78317 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.51□□□□□ -0.25
RNF4P78317 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms