Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 OR8S1-201ENST00000310194 1080 ntBASIC15.47■□□□□ 0.07
LIG3P49916 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.47■□□□□ 0.07
LIG3P49916 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.47■□□□□ 0.07
LIG3P49916 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.47■□□□□ 0.07
LIG3P49916 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.47■□□□□ 0.07
LIG3P49916 GPR53P-205ENST00000457298 1084 ntBASIC15.47■□□□□ 0.07
LIG3P49916 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.47■□□□□ 0.07
LIG3P49916 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.47■□□□□ 0.07
LIG3P49916 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.47■□□□□ 0.07
LIG3P49916 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
LIG3P49916 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
LIG3P49916 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.47■□□□□ 0.07
LIG3P49916 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.47■□□□□ 0.07
LIG3P49916 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.47■□□□□ 0.07
LIG3P49916 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.47■□□□□ 0.07
LIG3P49916 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.47■□□□□ 0.07
LIG3P49916 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.47■□□□□ 0.07
LIG3P49916 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIG3P49916 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.47■□□□□ 0.07
LIG3P49916 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
LIG3P49916 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.46■□□□□ 0.07
LIG3P49916 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.46■□□□□ 0.07
LIG3P49916 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.46■□□□□ 0.07
LIG3P49916 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
LIG3P49916 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 BEND3P3-201ENST00000611030 2440 ntBASIC15.46■□□□□ 0.07
LIG3P49916 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
LIG3P49916 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
LIG3P49916 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
LIG3P49916 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
LIG3P49916 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC15.46■□□□□ 0.07
LIG3P49916 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
LIG3P49916 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
LIG3P49916 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
LIG3P49916 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.46■□□□□ 0.07
LIG3P49916 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
LIG3P49916 AP001582.1-201ENST00000525856 295 ntBASIC15.46■□□□□ 0.07
LIG3P49916 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.46■□□□□ 0.07
LIG3P49916 KRT17P8-201ENST00000540749 863 ntBASIC15.46■□□□□ 0.07
LIG3P49916 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.46■□□□□ 0.07
LIG3P49916 AP001063.1-201ENST00000568332 529 ntBASIC15.46■□□□□ 0.07
LIG3P49916 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.46■□□□□ 0.07
LIG3P49916 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.46■□□□□ 0.07
LIG3P49916 AL138799.1-201ENST00000448213 1675 ntBASIC15.46■□□□□ 0.07
LIG3P49916 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
LIG3P49916 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC15.46■□□□□ 0.07
LIG3P49916 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIG3P49916 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
LIG3P49916 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.46■□□□□ 0.06
LIG3P49916 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIG3P49916 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIG3P49916 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC15.46■□□□□ 0.06
LIG3P49916 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
LIG3P49916 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIG3P49916 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIG3P49916 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIG3P49916 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
LIG3P49916 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
LIG3P49916 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
LIG3P49916 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.46■□□□□ 0.06
LIG3P49916 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIG3P49916 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIG3P49916 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIG3P49916 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
LIG3P49916 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC15.45■□□□□ 0.06
LIG3P49916 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.45■□□□□ 0.06
LIG3P49916 AC114271.1-201ENST00000612689 2813 ntBASIC15.45■□□□□ 0.06
LIG3P49916 RET-205ENST00000615310 4337 ntTSL 5 BASIC15.45■□□□□ 0.06
LIG3P49916 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
LIG3P49916 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LIG3P49916 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
LIG3P49916 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms