Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC004790.1-201ENST00000612686 536 ntBASIC12.93□□□□□ -0.34
SOX2P48431 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC12.93□□□□□ -0.34
SOX2P48431 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
SOX2P48431 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC12.93□□□□□ -0.34
SOX2P48431 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 LRRC59-203ENST00000576448 1531 ntBASIC12.93□□□□□ -0.34
SOX2P48431 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.92□□□□□ -0.34
SOX2P48431 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC12.92□□□□□ -0.34
SOX2P48431 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC12.92□□□□□ -0.34
SOX2P48431 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.92□□□□□ -0.34
SOX2P48431 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC12.92□□□□□ -0.34
SOX2P48431 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC12.92□□□□□ -0.34
SOX2P48431 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC12.92□□□□□ -0.34
SOX2P48431 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
SOX2P48431 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC12.92□□□□□ -0.34
SOX2P48431 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
SOX2P48431 AC134915.1-201ENST00000426461 574 ntBASIC12.92□□□□□ -0.34
SOX2P48431 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
SOX2P48431 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC12.92□□□□□ -0.34
SOX2P48431 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC12.92□□□□□ -0.34
SOX2P48431 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC12.92□□□□□ -0.34
SOX2P48431 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
SOX2P48431 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC12.92□□□□□ -0.34
SOX2P48431 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC12.92□□□□□ -0.34
SOX2P48431 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC12.92□□□□□ -0.34
SOX2P48431 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC12.92□□□□□ -0.34
SOX2P48431 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC12.92□□□□□ -0.34
SOX2P48431 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC12.92□□□□□ -0.34
SOX2P48431 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC12.92□□□□□ -0.34
SOX2P48431 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC12.92□□□□□ -0.34
SOX2P48431 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC12.92□□□□□ -0.34
SOX2P48431 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 AL157996.1-201ENST00000624684 2299 ntBASIC12.92□□□□□ -0.34
SOX2P48431 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.92□□□□□ -0.34
SOX2P48431 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
SOX2P48431 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC12.92□□□□□ -0.34
SOX2P48431 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
SOX2P48431 REXO1L1P-201ENST00000379010 6598 ntBASIC12.91□□□□□ -0.34
SOX2P48431 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
SOX2P48431 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC12.91□□□□□ -0.34
SOX2P48431 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
SOX2P48431 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
SOX2P48431 AC090643.2-201ENST00000623442 2029 ntBASIC12.91□□□□□ -0.34
SOX2P48431 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SOX2P48431 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
SOX2P48431 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SOX2P48431 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC12.91□□□□□ -0.34
SOX2P48431 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SOX2P48431 AC022144.1-201ENST00000602255 1580 ntBASIC12.91□□□□□ -0.34
SOX2P48431 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SOX2P48431 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC12.91□□□□□ -0.34
SOX2P48431 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
SOX2P48431 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC12.91□□□□□ -0.34
SOX2P48431 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SOX2P48431 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
SOX2P48431 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.91□□□□□ -0.34
SOX2P48431 C1QBPP1-201ENST00000400117 770 ntBASIC12.91□□□□□ -0.34
SOX2P48431 HLA-DRB6-201ENST00000411500 1235 ntBASIC12.91□□□□□ -0.34
SOX2P48431 KLF2P2-201ENST00000416807 1039 ntBASIC12.91□□□□□ -0.34
SOX2P48431 TLE1P1-201ENST00000422965 589 ntBASIC12.91□□□□□ -0.34
SOX2P48431 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms