Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC18.98■□□□□ 0.63
HOXC9P31274 GCSHP3-201ENST00000431120 391 ntBASIC18.98■□□□□ 0.63
HOXC9P31274 TPT1P11-201ENST00000458482 498 ntBASIC18.98■□□□□ 0.63
HOXC9P31274 RN7SL23P-201ENST00000484055 275 ntBASIC18.98■□□□□ 0.63
HOXC9P31274 RN7SL767P-201ENST00000493013 295 ntBASIC18.98■□□□□ 0.63
HOXC9P31274 AREG-202ENST00000502307 956 ntTSL 5 BASIC18.98■□□□□ 0.63
HOXC9P31274 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC18.98■□□□□ 0.63
HOXC9P31274 AL512310.5-201ENST00000551999 515 ntBASIC18.98■□□□□ 0.63
HOXC9P31274 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC18.98■□□□□ 0.63
HOXC9P31274 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 GAS7-216ENST00000583882 553 ntTSL 5 BASIC18.98■□□□□ 0.63
HOXC9P31274 AC011471.3-201ENST00000623576 402 ntBASIC18.98■□□□□ 0.63
HOXC9P31274 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC18.98■□□□□ 0.63
HOXC9P31274 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
HOXC9P31274 RN7SL832P-201ENST00000607781 1756 ntBASIC18.98■□□□□ 0.63
HOXC9P31274 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
HOXC9P31274 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.98■□□□□ 0.63
HOXC9P31274 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC9P31274 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
HOXC9P31274 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC9P31274 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC9P31274 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC9P31274 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
HOXC9P31274 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC9P31274 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC9P31274 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC9P31274 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC9P31274 AMT-256ENST00000638063 1783 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC9P31274 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
HOXC9P31274 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC9P31274 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC9P31274 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC9P31274 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC9P31274 GRPEL2P1-201ENST00000453145 339 ntBASIC18.97■□□□□ 0.63
HOXC9P31274 CHCHD2P2-201ENST00000503744 321 ntBASIC18.97■□□□□ 0.63
HOXC9P31274 SNORD3B-1-201ENST00000577988 758 ntBASIC18.97■□□□□ 0.63
HOXC9P31274 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.97■□□□□ 0.63
HOXC9P31274 ST5-261ENST00000626808 1071 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC9P31274 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
HOXC9P31274 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC9P31274 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC9P31274 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC9P31274 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC9P31274 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
HOXC9P31274 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
HOXC9P31274 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC9P31274 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC9P31274 ODCP-201ENST00000459650 1639 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
HOXC9P31274 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
HOXC9P31274 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC9P31274 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
HOXC9P31274 MIR1227-201ENST00000408484 88 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC18.96■□□□□ 0.63
HOXC9P31274 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.96■□□□□ 0.63
HOXC9P31274 AQP7P5-201ENST00000428759 1049 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 AQP7P4-201ENST00000447083 1042 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC18.96■□□□□ 0.63
HOXC9P31274 GNG10P1-201ENST00000452289 199 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC18.96■□□□□ 0.63
HOXC9P31274 AQP7P2-201ENST00000453967 1041 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 PGAM1P12-201ENST00000505622 748 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 AC023824.1-201ENST00000562945 2975 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
HOXC9P31274 AC012073.1-201ENST00000606114 1108 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 HPX-213ENST00000615166 826 ntTSL 5 BASIC18.96■□□□□ 0.63
HOXC9P31274 FO393412.1-201ENST00000619841 382 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 AC138466.4-201ENST00000623965 852 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 AQP7P3-201ENST00000624547 1041 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 AC002472.4-201ENST00000641915 272 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC9P31274 SHMT1P1-201ENST00000419974 1312 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 KRT8P43-201ENST00000406052 1458 ntBASIC18.96■□□□□ 0.63
HOXC9P31274 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
HOXC9P31274 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC18.96■□□□□ 0.63
HOXC9P31274 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
HOXC9P31274 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC9P31274 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC9P31274 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC9P31274 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
HOXC9P31274 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.62
HOXC9P31274 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms