Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
MSX1P28360 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.42□□□□□ -0.26
MSX1P28360 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.42□□□□□ -0.26
MSX1P28360 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
MSX1P28360 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.42□□□□□ -0.26
MSX1P28360 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
MSX1P28360 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.42□□□□□ -0.26
MSX1P28360 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.42□□□□□ -0.26
MSX1P28360 AC105129.2-201ENST00000559536 390 ntBASIC13.42□□□□□ -0.26
MSX1P28360 NDUFV2P1-201ENST00000596415 907 ntBASIC13.42□□□□□ -0.26
MSX1P28360 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
MSX1P28360 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
MSX1P28360 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
MSX1P28360 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 AC106881.1-201ENST00000605849 3329 ntBASIC13.41□□□□□ -0.26
MSX1P28360 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 AC015802.1-201ENST00000588104 1449 ntBASIC13.41□□□□□ -0.26
MSX1P28360 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.41□□□□□ -0.26
MSX1P28360 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.41□□□□□ -0.26
MSX1P28360 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC13.41□□□□□ -0.26
MSX1P28360 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.41□□□□□ -0.26
MSX1P28360 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC13.41□□□□□ -0.26
MSX1P28360 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.41□□□□□ -0.26
MSX1P28360 MIR3619-201ENST00000579667 83 ntBASIC13.41□□□□□ -0.26
MSX1P28360 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 AC132192.2-201ENST00000596206 1147 ntBASIC13.41□□□□□ -0.26
MSX1P28360 AL451050.2-201ENST00000606967 682 ntBASIC13.41□□□□□ -0.26
MSX1P28360 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 AC138627.1-207ENST00000641560 1006 ntBASIC13.41□□□□□ -0.26
MSX1P28360 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
MSX1P28360 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.41□□□□□ -0.26
MSX1P28360 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
MSX1P28360 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
MSX1P28360 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
MSX1P28360 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.4□□□□□ -0.26
MSX1P28360 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
MSX1P28360 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
MSX1P28360 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
MSX1P28360 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
MSX1P28360 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
MSX1P28360 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
MSX1P28360 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
MSX1P28360 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
MSX1P28360 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
MSX1P28360 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
MSX1P28360 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms