Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.473e-7■□□□□ 8.9
YBX3P16989 ARHGAP4-207ENST00000420383 2817 ntTSL 217.85■□□□□ 0.458e-7■□□□□ 8.9
YBX3P16989 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.7■□□□□ 0.428e-7■□□□□ 8.9
YBX3P16989 ARHGAP4-219ENST00000470209 2889 ntTSL 517.33■□□□□ 0.368e-7■□□□□ 8.9
YBX3P16989 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17■□□□□ 0.313e-7■□□□□ 8.9
YBX3P16989 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.298e-7■□□□□ 8.9
YBX3P16989 ARHGAP4-205ENST00000404127 3232 ntTSL 516.72■□□□□ 0.278e-7■□□□□ 8.9
YBX3P16989 DNAJC11-210ENST00000473993 755 ntTSL 516.09■□□□□ 0.178e-7■□□□□ 8.9
YBX3P16989 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.168e-7■□□□□ 8.9
YBX3P16989 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.148e-7■□□□□ 8.9
YBX3P16989 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.118e-7■□□□□ 8.9
YBX3P16989 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.038e-7■□□□□ 8.9
YBX3P16989 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.028e-7■□□□□ 8.9
YBX3P16989 SEC16A-208ENST00000467838 1988 ntTSL 215.06■□□□□ 02e-6■□□□□ 8.9
YBX3P16989 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.028e-7■□□□□ 8.9
YBX3P16989 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.168e-7■□□□□ 8.9
YBX3P16989 CTDSPL-202ENST00000310189 1482 ntTSL 513.37□□□□□ -0.278e-7■□□□□ 8.9
YBX3P16989 CES2-202ENST00000417689 3868 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.428e-7■□□□□ 8.9
YBX3P16989 NUP188-205ENST00000477069 2941 ntTSL 1 (best)12.34□□□□□ -0.432e-6■□□□□ 8.9
YBX3P16989 AC068896.1-201ENST00000494792 3422 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.448e-7■□□□□ 8.9
YBX3P16989 PRMT7-225ENST00000568975 2996 ntTSL 212.11□□□□□ -0.478e-7■□□□□ 8.9
YBX3P16989 PRMT7-210ENST00000563562 487 ntTSL 511.95□□□□□ -0.58e-7■□□□□ 8.9
YBX3P16989 CTPS1-208ENST00000479480 777 ntTSL 511.9□□□□□ -0.58e-7■□□□□ 8.9
YBX3P16989 CENPW-202ENST00000368326 443 ntTSL 2 BASIC11.87□□□□□ -0.518e-7■□□□□ 8.9
YBX3P16989 CES2-201ENST00000317091 3927 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.568e-7■□□□□ 8.9
YBX3P16989 CTPS1-209ENST00000480420 750 ntTSL 310.85□□□□□ -0.678e-7■□□□□ 8.9
YBX3P16989 SEC16A-204ENST00000313084 3073 ntAPPRIS ALT2 TSL 2 BASIC10.44□□□□□ -0.742e-6■□□□□ 8.9
YBX3P16989 CENPW-201ENST00000368325 528 ntTSL 3 BASIC10.3□□□□□ -0.768e-7■□□□□ 8.9
YBX3P16989 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.778e-7■□□□□ 8.9
YBX3P16989 PRMT7-207ENST00000562456 344 ntTSL 39.76□□□□□ -0.858e-7■□□□□ 8.9
YBX3P16989 DNAJC11-203ENST00000426784 975 ntTSL 39.31□□□□□ -0.928e-7■□□□□ 8.9
YBX3P16989 PRMT7-204ENST00000561806 543 ntTSL 59.04□□□□□ -0.968e-7■□□□□ 8.9
YBX3P16989 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.018e-7■□□□□ 8.9
YBX3P16989 EPN1-206ENST00000589704 250 ntTSL 58.07□□□□□ -1.128e-7■□□□□ 8.9
YBX3P16989 HOOK3-205ENST00000533338 774 ntTSL 37.41□□□□□ -1.228e-7■□□□□ 8.9
YBX3P16989 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.13□□□□□ -1.278e-7■□□□□ 8.9
YBX3P16989 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.58□□□□□ -1.368e-7■□□□□ 8.9
YBX3P16989 CLASP2-207ENST00000464961 6273 ntTSL 26.36□□□□□ -1.398e-7■□□□□ 8.9
YBX3P16989 COG5-209ENST00000484237 574 ntTSL 46.11□□□□□ -1.438e-7■□□□□ 8.9
YBX3P16989 PRMT7-219ENST00000566430 382 ntTSL 25.95□□□□□ -1.468e-7■□□□□ 8.9
YBX3P16989 DDX1-205ENST00000470674 556 ntTSL 25.88□□□□□ -1.478e-7■□□□□ 8.9
YBX3P16989 NUP155-204ENST00000507233 459 ntTSL 45.46□□□□□ -1.548e-7■□□□□ 8.9
YBX3P16989 PRDX4-205ENST00000495599 632 ntTSL 323.17■■□□□ 1.32e-9■□□□□ 8.9
YBX3P16989 PRDX4-203ENST00000379349 815 ntTSL 316.9■□□□□ 0.32e-9■□□□□ 8.9
YBX3P16989 RPL18A-206ENST00000600238 954 ntTSL 213.82□□□□□ -0.24e-22■□□□□ 8.9
YBX3P16989 RPL26-208ENST00000583515 534 ntTSL 28.1□□□□□ -1.117e-21■□□□□ 8.9
YBX3P16989 NUP214-206ENST00000470765 620 ntTSL 510.89□□□□□ -0.671e-15■□□□□ 8.9
YBX3P16989 NUP214-216ENST00000526346 577 ntTSL 410.78□□□□□ -0.681e-15■□□□□ 8.9
YBX3P16989 NUP214-227ENST00000531929 593 ntTSL 43.77□□□□□ -1.811e-15■□□□□ 8.9
YBX3P16989 NUP214-212ENST00000524578 524 ntTSL 33.16□□□□□ -1.91e-15■□□□□ 8.9
YBX3P16989 ITM2C-205ENST00000418408 563 ntTSL 422.05■■□□□ 1.121e-6■□□□□ 8.8
YBX3P16989 ITM2C-206ENST00000457215 763 ntTSL 421.45■■□□□ 1.021e-6■□□□□ 8.8
YBX3P16989 ITM2C-207ENST00000492029 549 ntTSL 520.39■□□□□ 0.851e-6■□□□□ 8.8
YBX3P16989 ITM2C-208ENST00000541852 572 ntTSL 320.39■□□□□ 0.851e-6■□□□□ 8.8
YBX3P16989 ITM2C-209ENST00000543957 573 ntTSL 517.75■□□□□ 0.431e-6■□□□□ 8.8
YBX3P16989 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC8.25□□□□□ -1.092e-9■□□□□ 8.8
YBX3P16989 YBX1-204ENST00000467957 770 ntTSL 224.31■■□□□ 1.483e-22■□□□□ 8.8
YBX3P16989 ATP5J2-PTCD1-202ENST00000437572 544 ntTSL 421.04■□□□□ 0.964e-17■□□□□ 8.8
YBX3P16989 PTCD1-204ENST00000430982 571 ntTSL 420.83■□□□□ 0.934e-17■□□□□ 8.8
YBX3P16989 ATP5J2-PTCD1-203ENST00000451138 331 ntTSL 420.35■□□□□ 0.854e-17■□□□□ 8.8
YBX3P16989 ATP5J2-206ENST00000466753 774 ntTSL 215.78■□□□□ 0.124e-17■□□□□ 8.8
YBX3P16989 ATP5J2-204ENST00000414062 541 ntTSL 414.18□□□□□ -0.144e-17■□□□□ 8.8
YBX3P16989 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC10.92□□□□□ -0.664e-17■□□□□ 8.8
YBX3P16989 ATP5J2-202ENST00000359832 323 ntTSL 2 BASIC10.53□□□□□ -0.724e-17■□□□□ 8.8
YBX3P16989 ATP5J2-203ENST00000394186 305 ntAPPRIS P1 TSL 2 BASIC9.54□□□□□ -0.884e-17■□□□□ 8.8
YBX3P16989 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC9.07□□□□□ -0.964e-17■□□□□ 8.8
YBX3P16989 ATP5J2-210ENST00000491560 658 ntTSL 27.33□□□□□ -1.244e-17■□□□□ 8.8
YBX3P16989 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC6.2□□□□□ -1.424e-17■□□□□ 8.8
YBX3P16989 RPL17-211ENST00000581305 593 ntTSL 512.88□□□□□ -0.356e-42■□□□□ 8.8
YBX3P16989 RPL17-215ENST00000582782 562 ntTSL 36.56□□□□□ -1.366e-42■□□□□ 8.8
YBX3P16989 RPL17-203ENST00000578966 563 ntTSL 1 (best)5.64□□□□□ -1.516e-42■□□□□ 8.8
YBX3P16989 PRKCSH-211ENST00000590098 795 ntTSL 224.48■■□□□ 1.518e-10■□□□□ 8.8
YBX3P16989 PRKCSH-204ENST00000587290 780 ntTSL 220.89■□□□□ 0.938e-10■□□□□ 8.8
YBX3P16989 PRKCSH-203ENST00000586486 1613 ntTSL 1 (best)20.86■□□□□ 0.938e-10■□□□□ 8.8
YBX3P16989 PRKCSH-215ENST00000592435 358 ntTSL 512.94□□□□□ -0.348e-10■□□□□ 8.8
YBX3P16989 SERPINA5-208ENST00000554866 2211 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.442e-9■□□□□ 8.8
YBX3P16989 SERPINA5-205ENST00000554276 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.522e-9■□□□□ 8.8
YBX3P16989 SERPINA5-201ENST00000329597 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.582e-9■□□□□ 8.8
YBX3P16989 RALY-207ENST00000481580 773 ntTSL 231.77■■■□□ 2.686e-8■□□□□ 8.8
YBX3P16989 BSCL2-225ENST00000532818 662 ntTSL 219.53■□□□□ 0.721e-8■□□□□ 8.8
YBX3P16989 BSCL2-218ENST00000525000 154 ntTSL 312.19□□□□□ -0.461e-8■□□□□ 8.8
YBX3P16989 BSCL2-226ENST00000533982 585 ntTSL 510.2□□□□□ -0.781e-8■□□□□ 8.8
YBX3P16989 MAN2A2-205ENST00000558171 790 ntTSL 518.8■□□□□ 0.69e-13■□□□□ 8.8
YBX3P16989 MARCH6-203ENST00000502795 580 ntTSL 417.26■□□□□ 0.351e-8■□□□□ 8.8
YBX3P16989 MARCH6-209ENST00000510872 577 ntTSL 416.67■□□□□ 0.261e-8■□□□□ 8.8
YBX3P16989 MARCH6-207ENST00000507863 582 ntTSL 49.75□□□□□ -0.851e-8■□□□□ 8.8
YBX3P16989 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC5.55□□□□□ -1.521e-8■□□□□ 8.8
YBX3P16989 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.431e-9■□□□□ 8.8
YBX3P16989 MYL4-208ENST00000572316 850 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.091e-9■□□□□ 8.8
YBX3P16989 MYL4-201ENST00000354968 907 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.091e-9■□□□□ 8.8
YBX3P16989 MYL4-206ENST00000571981 920 ntTSL 314.49□□□□□ -0.091e-9■□□□□ 8.8
YBX3P16989 MKRN1-207ENST00000473444 720 ntTSL 324.68■■□□□ 1.549e-15■□□□□ 8.8
YBX3P16989 MKRN1-204ENST00000467513 1133 ntTSL 518.14■□□□□ 0.499e-15■□□□□ 8.8
YBX3P16989 MKRN1-210ENST00000475180 560 ntTSL 514.21□□□□□ -0.139e-15■□□□□ 8.8
YBX3P16989 MKRN1-213ENST00000494939 784 ntTSL 311□□□□□ -0.659e-15■□□□□ 8.8
YBX3P16989 JTB-206ENST00000471173 754 ntTSL 328.62■■■□□ 2.172e-8■□□□□ 8.8
YBX3P16989 ARIH1-204ENST00000562891 604 ntTSL 58.95□□□□□ -0.982e-8■□□□□ 8.8
YBX3P16989 ARIH1-202ENST00000561770 478 ntTSL 38.49□□□□□ -1.052e-8■□□□□ 8.8
YBX3P16989 ARIH1-208ENST00000566063 630 ntTSL 27.35□□□□□ -1.232e-8■□□□□ 8.8
YBX3P16989 Y_RNA.154-201ENST00000363624 102 ntBASIC6.44□□□□□ -1.384e-7■□□□□ 8.8
Retrieved 100 of 29,075 protein–RNA pairs in 194.9 ms