Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.57□□□□□ -0.08
COL6A3P12111 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
COL6A3P12111 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.57□□□□□ -0.08
COL6A3P12111 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
COL6A3P12111 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.57□□□□□ -0.08
COL6A3P12111 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
COL6A3P12111 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.57□□□□□ -0.08
COL6A3P12111 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
COL6A3P12111 AC118758.1-201ENST00000448242 564 ntTSL 4 BASIC14.57□□□□□ -0.08
COL6A3P12111 MOG-229ENST00000483013 279 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 MOG-232ENST00000490427 327 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC14.57□□□□□ -0.08
COL6A3P12111 FTH1-205ENST00000529631 507 ntTSL 4 BASIC14.57□□□□□ -0.08
COL6A3P12111 AP000439.1-201ENST00000544004 581 ntTSL 4 BASIC14.57□□□□□ -0.08
COL6A3P12111 AC010601.1-201ENST00000569048 446 ntTSL 5 BASIC14.57□□□□□ -0.08
COL6A3P12111 MEP1AP1-201ENST00000636082 1097 ntBASIC14.57□□□□□ -0.08
COL6A3P12111 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC14.57□□□□□ -0.08
COL6A3P12111 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.57□□□□□ -0.08
COL6A3P12111 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC14.57□□□□□ -0.08
COL6A3P12111 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
COL6A3P12111 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.57□□□□□ -0.08
COL6A3P12111 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
COL6A3P12111 AC020763.4-201ENST00000623414 4170 ntBASIC14.57□□□□□ -0.08
COL6A3P12111 OR8B8-201ENST00000328064 1033 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
COL6A3P12111 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC14.57□□□□□ -0.08
COL6A3P12111 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.57□□□□□ -0.08
COL6A3P12111 SSR3-202ENST00000463503 596 ntTSL 4 BASIC14.57□□□□□ -0.08
COL6A3P12111 AC010547.1-202ENST00000567341 230 ntTSL 2 BASIC14.57□□□□□ -0.08
COL6A3P12111 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.56□□□□□ -0.08
COL6A3P12111 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.56□□□□□ -0.08
COL6A3P12111 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.56□□□□□ -0.08
COL6A3P12111 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.56□□□□□ -0.08
COL6A3P12111 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.56□□□□□ -0.08
COL6A3P12111 CAPG-204ENST00000409724 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 VAMP1-204ENST00000535180 747 ntTSL 3 BASIC14.56□□□□□ -0.08
COL6A3P12111 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
COL6A3P12111 AC140658.4-201ENST00000561990 352 ntBASIC14.56□□□□□ -0.08
COL6A3P12111 IGHV3OR16-11-201ENST00000565524 349 ntBASIC14.56□□□□□ -0.08
COL6A3P12111 AC022382.1-201ENST00000602768 336 ntBASIC14.56□□□□□ -0.08
COL6A3P12111 AC108002.3-201ENST00000612629 503 ntTSL 2 BASIC14.56□□□□□ -0.08
COL6A3P12111 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC14.56□□□□□ -0.08
COL6A3P12111 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14.56□□□□□ -0.08
COL6A3P12111 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.56□□□□□ -0.08
COL6A3P12111 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A3P12111 OR7E155P-201ENST00000412208 1014 ntBASIC14.56□□□□□ -0.08
COL6A3P12111 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.56□□□□□ -0.08
COL6A3P12111 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC14.56□□□□□ -0.08
COL6A3P12111 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.56□□□□□ -0.08
COL6A3P12111 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
COL6A3P12111 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
COL6A3P12111 PTAFR-201ENST00000305392 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.55□□□□□ -0.08
COL6A3P12111 RPP30-203ENST00000413330 1004 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A3P12111 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.55□□□□□ -0.08
COL6A3P12111 EEF1DP2-201ENST00000433698 843 ntBASIC14.55□□□□□ -0.08
COL6A3P12111 MIR378I-201ENST00000582688 76 ntBASIC14.55□□□□□ -0.08
COL6A3P12111 AC011479.2-201ENST00000598146 432 ntTSL 3 BASIC14.55□□□□□ -0.08
COL6A3P12111 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC14.55□□□□□ -0.08
COL6A3P12111 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A3P12111 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A3P12111 MIR100HG-219ENST00000533109 1794 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A3P12111 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 NAA10-205ENST00000393712 908 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A3P12111 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC14.55□□□□□ -0.08
COL6A3P12111 C8orf37-AS1-203ENST00000521905 617 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A3P12111 AC007274.3-201ENST00000619838 385 ntBASIC14.55□□□□□ -0.08
COL6A3P12111 AC138907.9-201ENST00000623747 986 ntBASIC14.55□□□□□ -0.08
COL6A3P12111 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A3P12111 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL6A3P12111 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC14.55□□□□□ -0.08
COL6A3P12111 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A3P12111 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.55□□□□□ -0.08
COL6A3P12111 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms