Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 CICP14-201ENST00000629111 2732 ntBASIC17.09■□□□□ 0.33
HLA-DOAP06340 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 RPS9P1-201ENST00000419943 583 ntBASIC17.09■□□□□ 0.33
HLA-DOAP06340 AL161932.2-201ENST00000435436 679 ntBASIC17.09■□□□□ 0.33
HLA-DOAP06340 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 NAGK-204ENST00000443872 878 ntTSL 3 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 AC022447.6-201ENST00000515522 438 ntBASIC17.09■□□□□ 0.33
HLA-DOAP06340 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 AL031713.1-201ENST00000564813 661 ntBASIC17.09■□□□□ 0.33
HLA-DOAP06340 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 AC215219.1-201ENST00000400706 1817 ntBASIC17.09■□□□□ 0.33
HLA-DOAP06340 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 MTHFR-210ENST00000641407 2387 ntBASIC17.09■□□□□ 0.33
HLA-DOAP06340 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
HLA-DOAP06340 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DOAP06340 ABR-205ENST00000544583 5595 ntTSL 2 BASIC17.08■□□□□ 0.33
HLA-DOAP06340 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DOAP06340 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DOAP06340 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DOAP06340 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
HLA-DOAP06340 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DOAP06340 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
HLA-DOAP06340 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DOAP06340 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.08■□□□□ 0.33
HLA-DOAP06340 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DOAP06340 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DOAP06340 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.08■□□□□ 0.33
HLA-DOAP06340 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
HLA-DOAP06340 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC17.08■□□□□ 0.33
HLA-DOAP06340 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.08■□□□□ 0.33
HLA-DOAP06340 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC17.08■□□□□ 0.33
HLA-DOAP06340 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC17.08■□□□□ 0.33
HLA-DOAP06340 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 HPGD-203ENST00000422112 805 ntTSL 2 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 AC078991.1-201ENST00000437297 610 ntBASIC17.08■□□□□ 0.32
HLA-DOAP06340 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 IQSEC3P1-201ENST00000538799 536 ntBASIC17.08■□□□□ 0.32
HLA-DOAP06340 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 AC018635.2-201ENST00000608625 364 ntBASIC17.08■□□□□ 0.32
HLA-DOAP06340 MIR6074-201ENST00000612054 107 ntBASIC17.08■□□□□ 0.32
HLA-DOAP06340 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
HLA-DOAP06340 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DOAP06340 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
HLA-DOAP06340 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HLA-DOAP06340 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DOAP06340 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.07■□□□□ 0.32
HLA-DOAP06340 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
HLA-DOAP06340 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms