Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC188H7C350 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 SPDYE19P-201ENST00000338590 713 ntBASIC15.2■□□□□ 0.02
CCDC188H7C350 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC188H7C350 AL391647.1-201ENST00000395664 511 ntBASIC15.2■□□□□ 0.02
CCDC188H7C350 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC15.2■□□□□ 0.02
CCDC188H7C350 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.2■□□□□ 0.02
CCDC188H7C350 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.2■□□□□ 0.02
CCDC188H7C350 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.2■□□□□ 0.02
CCDC188H7C350 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.2■□□□□ 0.02
CCDC188H7C350 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.2■□□□□ 0.02
CCDC188H7C350 AL359711.2-201ENST00000563105 872 ntBASIC15.2■□□□□ 0.02
CCDC188H7C350 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
CCDC188H7C350 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC15.2■□□□□ 0.02
CCDC188H7C350 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CCDC188H7C350 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC188H7C350 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
CCDC188H7C350 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CCDC188H7C350 CLUHP2-201ENST00000426660 1303 ntBASIC15.19■□□□□ 0.02
CCDC188H7C350 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CCDC188H7C350 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
CCDC188H7C350 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC188H7C350 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CCDC188H7C350 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CCDC188H7C350 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.19■□□□□ 0.02
CCDC188H7C350 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC188H7C350 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.19■□□□□ 0.02
CCDC188H7C350 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC188H7C350 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC188H7C350 AL390754.1-201ENST00000619088 582 ntBASIC15.19■□□□□ 0.02
CCDC188H7C350 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CCDC188H7C350 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CCDC188H7C350 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CCDC188H7C350 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC188H7C350 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC188H7C350 AC009474.1-201ENST00000455096 1565 ntBASIC15.19■□□□□ 0.02
CCDC188H7C350 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CCDC188H7C350 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CCDC188H7C350 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC188H7C350 AC020910.5-201ENST00000623668 1865 ntBASIC15.18■□□□□ 0.02
CCDC188H7C350 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC188H7C350 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CCDC188H7C350 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC188H7C350 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 TET3-201ENST00000305799 5174 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC188H7C350 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC188H7C350 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms