Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 AC239800.4-201ENST00000603712 296 ntBASIC14.12□□□□□ -0.15
PCDH1Q08174 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.12□□□□□ -0.15
PCDH1Q08174 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
PCDH1Q08174 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
PCDH1Q08174 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
PCDH1Q08174 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.12□□□□□ -0.15
PCDH1Q08174 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.12□□□□□ -0.15
PCDH1Q08174 AL359881.3-201ENST00000602640 1721 ntBASIC14.12□□□□□ -0.15
PCDH1Q08174 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
PCDH1Q08174 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
PCDH1Q08174 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
PCDH1Q08174 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCDH1Q08174 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.11□□□□□ -0.15
PCDH1Q08174 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.11□□□□□ -0.15
PCDH1Q08174 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.11□□□□□ -0.15
PCDH1Q08174 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
PCDH1Q08174 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
PCDH1Q08174 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.11□□□□□ -0.15
PCDH1Q08174 AC079776.1-201ENST00000401540 1152 ntBASIC14.11□□□□□ -0.15
PCDH1Q08174 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.11□□□□□ -0.15
PCDH1Q08174 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.11□□□□□ -0.15
PCDH1Q08174 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.11□□□□□ -0.15
PCDH1Q08174 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.11□□□□□ -0.15
PCDH1Q08174 TMEM198B-204ENST00000484016 896 ntBASIC14.11□□□□□ -0.15
PCDH1Q08174 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.11□□□□□ -0.15
PCDH1Q08174 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.11□□□□□ -0.15
PCDH1Q08174 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
PCDH1Q08174 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.11□□□□□ -0.15
PCDH1Q08174 AC023310.1-201ENST00000554836 735 ntBASIC14.11□□□□□ -0.15
PCDH1Q08174 KRT8P24-201ENST00000560290 1559 ntBASIC14.11□□□□□ -0.15
PCDH1Q08174 DUX4L46-201ENST00000566845 751 ntBASIC14.11□□□□□ -0.15
PCDH1Q08174 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.11□□□□□ -0.15
PCDH1Q08174 AC012617.1-204ENST00000586340 2305 ntBASIC14.11□□□□□ -0.15
PCDH1Q08174 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
PCDH1Q08174 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.11□□□□□ -0.15
PCDH1Q08174 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.11□□□□□ -0.15
PCDH1Q08174 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.11□□□□□ -0.15
PCDH1Q08174 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 KRT8P4-201ENST00000509735 1454 ntBASIC14.11□□□□□ -0.15
PCDH1Q08174 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.11□□□□□ -0.15
PCDH1Q08174 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 AL928921.2-201ENST00000641325 2442 ntBASIC14.11□□□□□ -0.15
PCDH1Q08174 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
PCDH1Q08174 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.11□□□□□ -0.15
PCDH1Q08174 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PCDH1Q08174 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.1□□□□□ -0.15
PCDH1Q08174 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
PCDH1Q08174 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 AC005252.3-201ENST00000623855 2258 ntBASIC14.1□□□□□ -0.15
PCDH1Q08174 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms