Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC8.64□□□□□ -1.03
HSPG2P98160 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC8.64□□□□□ -1.03
HSPG2P98160 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC8.64□□□□□ -1.03
HSPG2P98160 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
HSPG2P98160 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
HSPG2P98160 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 AC008267.3-201ENST00000448776 712 ntBASIC8.64□□□□□ -1.03
HSPG2P98160 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
HSPG2P98160 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC8.64□□□□□ -1.03
HSPG2P98160 CMC2-204ENST00000562713 573 ntTSL 3 BASIC8.64□□□□□ -1.03
HSPG2P98160 CMC2-209ENST00000565108 399 ntTSL 2 BASIC8.64□□□□□ -1.03
HSPG2P98160 AC123912.6-201ENST00000612657 315 ntBASIC8.64□□□□□ -1.03
HSPG2P98160 AC148476.1-201ENST00000622182 705 ntBASIC8.64□□□□□ -1.03
HSPG2P98160 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
HSPG2P98160 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 AL031577.1-201ENST00000339867 399 ntBASIC8.64□□□□□ -1.03
HSPG2P98160 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC8.64□□□□□ -1.03
HSPG2P98160 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC8.64□□□□□ -1.03
HSPG2P98160 AC093700.1-201ENST00000503348 717 ntBASIC8.64□□□□□ -1.03
HSPG2P98160 AC004923.4-201ENST00000532296 739 ntTSL 3 BASIC8.64□□□□□ -1.03
HSPG2P98160 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
HSPG2P98160 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 USP39-220ENST00000613444 2161 ntTSL 2 BASIC8.64□□□□□ -1.03
HSPG2P98160 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HSPG2P98160 OR2W2P-201ENST00000406313 909 ntBASIC8.64□□□□□ -1.03
HSPG2P98160 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC8.64□□□□□ -1.03
HSPG2P98160 AC079742.1-201ENST00000434951 357 ntTSL 3 BASIC8.64□□□□□ -1.03
HSPG2P98160 LINC02344-201ENST00000443576 644 ntTSL 2 BASIC8.64□□□□□ -1.03
HSPG2P98160 NDUFB2P1-201ENST00000506966 295 ntBASIC8.64□□□□□ -1.03
HSPG2P98160 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC8.64□□□□□ -1.03
HSPG2P98160 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC8.63□□□□□ -1.03
HSPG2P98160 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC8.63□□□□□ -1.03
HSPG2P98160 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 ATP5G1P7-201ENST00000444398 400 ntBASIC8.63□□□□□ -1.03
HSPG2P98160 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC8.63□□□□□ -1.03
HSPG2P98160 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC8.63□□□□□ -1.03
HSPG2P98160 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
HSPG2P98160 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 AP005117.1-202ENST00000581724 1908 ntBASIC8.63□□□□□ -1.03
HSPG2P98160 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 MIR1587-201ENST00000583319 53 ntBASIC8.63□□□□□ -1.03
HSPG2P98160 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC8.63□□□□□ -1.03
HSPG2P98160 AL591471.1-201ENST00000621855 229 ntBASIC8.63□□□□□ -1.03
HSPG2P98160 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 ADK-205ENST00000539909 1866 ntTSL 2 BASIC8.63□□□□□ -1.03
HSPG2P98160 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 ACE3P-201ENST00000423435 1973 ntBASIC8.63□□□□□ -1.03
HSPG2P98160 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HSPG2P98160 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 718.8 ms