Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC12.57□□□□□ -0.4
ABCA4P78363 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC12.57□□□□□ -0.4
ABCA4P78363 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
ABCA4P78363 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
ABCA4P78363 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
ABCA4P78363 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC12.57□□□□□ -0.4
ABCA4P78363 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC12.57□□□□□ -0.4
ABCA4P78363 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
ABCA4P78363 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC12.57□□□□□ -0.4
ABCA4P78363 AC003686.1-201ENST00000550956 1034 ntBASIC12.57□□□□□ -0.4
ABCA4P78363 SIGLEC18P-201ENST00000602271 909 ntBASIC12.57□□□□□ -0.4
ABCA4P78363 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
ABCA4P78363 AC073911.3-201ENST00000624401 631 ntBASIC12.57□□□□□ -0.4
ABCA4P78363 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
ABCA4P78363 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
ABCA4P78363 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
ABCA4P78363 AC138035.3-201ENST00000622706 2791 ntBASIC12.56□□□□□ -0.4
ABCA4P78363 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
ABCA4P78363 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.56□□□□□ -0.4
ABCA4P78363 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC12.56□□□□□ -0.4
ABCA4P78363 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC12.56□□□□□ -0.4
ABCA4P78363 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 AC073347.1-201ENST00000421633 2643 ntBASIC12.56□□□□□ -0.4
ABCA4P78363 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
ABCA4P78363 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC12.56□□□□□ -0.4
ABCA4P78363 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC12.56□□□□□ -0.4
ABCA4P78363 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC12.56□□□□□ -0.4
ABCA4P78363 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC12.56□□□□□ -0.4
ABCA4P78363 AL807761.2-201ENST00000422849 729 ntBASIC12.56□□□□□ -0.4
ABCA4P78363 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC12.56□□□□□ -0.4
ABCA4P78363 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC12.56□□□□□ -0.4
ABCA4P78363 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC12.56□□□□□ -0.4
ABCA4P78363 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
ABCA4P78363 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC12.56□□□□□ -0.4
ABCA4P78363 AC105137.3-201ENST00000617588 984 ntBASIC12.56□□□□□ -0.4
ABCA4P78363 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC12.56□□□□□ -0.4
ABCA4P78363 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.56□□□□□ -0.4
ABCA4P78363 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.56□□□□□ -0.4
ABCA4P78363 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 AC126365.1-201ENST00000578585 1514 ntBASIC12.56□□□□□ -0.4
ABCA4P78363 AC139712.1-201ENST00000378256 1875 ntBASIC12.56□□□□□ -0.4
ABCA4P78363 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.56□□□□□ -0.4
ABCA4P78363 CNTNAP3P2-201ENST00000617175 3861 ntBASIC12.56□□□□□ -0.4
ABCA4P78363 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC12.56□□□□□ -0.4
ABCA4P78363 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
ABCA4P78363 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC12.56□□□□□ -0.4
ABCA4P78363 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC12.56□□□□□ -0.4
ABCA4P78363 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
ABCA4P78363 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC12.55□□□□□ -0.4
ABCA4P78363 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 JTB-202ENST00000356648 1040 ntTSL 2 BASIC12.55□□□□□ -0.4
ABCA4P78363 NCR3-202ENST00000376071 541 ntTSL 5 BASIC12.55□□□□□ -0.4
ABCA4P78363 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC12.55□□□□□ -0.4
ABCA4P78363 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC12.55□□□□□ -0.4
ABCA4P78363 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC12.55□□□□□ -0.4
ABCA4P78363 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
ABCA4P78363 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC12.55□□□□□ -0.4
ABCA4P78363 AC138466.5-201ENST00000624002 808 ntBASIC12.55□□□□□ -0.4
ABCA4P78363 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC12.55□□□□□ -0.4
ABCA4P78363 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
ABCA4P78363 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.55□□□□□ -0.4
ABCA4P78363 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
ABCA4P78363 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
ABCA4P78363 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms