Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SLC6A19-201ENST00000304460 5174 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 DPYSL5-201ENST00000288699 5209 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC10.36□□□□□ -0.75
CKS1BP61024 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC10.36□□□□□ -0.75
CKS1BP61024 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
CKS1BP61024 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 PI4KB-204ENST00000368875 3983 ntAPPRIS P3 TSL 5 BASIC10.36□□□□□ -0.75
CKS1BP61024 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 VAT1L-201ENST00000302536 3825 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
CKS1BP61024 ZNF621-202ENST00000339296 6378 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 PTMS-202ENST00000389462 773 ntTSL 2 BASIC10.36□□□□□ -0.75
CKS1BP61024 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 MED15P5-201ENST00000423150 992 ntBASIC10.36□□□□□ -0.75
CKS1BP61024 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC10.36□□□□□ -0.75
CKS1BP61024 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC10.36□□□□□ -0.75
CKS1BP61024 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC10.36□□□□□ -0.75
CKS1BP61024 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC10.36□□□□□ -0.75
CKS1BP61024 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC10.36□□□□□ -0.75
CKS1BP61024 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC10.36□□□□□ -0.75
CKS1BP61024 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC10.36□□□□□ -0.75
CKS1BP61024 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC10.36□□□□□ -0.75
CKS1BP61024 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC10.36□□□□□ -0.75
CKS1BP61024 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC10.36□□□□□ -0.75
CKS1BP61024 COQ9-214ENST00000567933 882 ntTSL 3 BASIC10.36□□□□□ -0.75
CKS1BP61024 IGHV3OR16-6-201ENST00000568775 360 ntBASIC10.36□□□□□ -0.75
CKS1BP61024 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC10.36□□□□□ -0.75
CKS1BP61024 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 AC011467.4-201ENST00000594891 528 ntBASIC10.36□□□□□ -0.75
CKS1BP61024 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC10.36□□□□□ -0.75
CKS1BP61024 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC10.36□□□□□ -0.75
CKS1BP61024 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 SGSM1-201ENST00000400358 6643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 RFX5-202ENST00000368870 2459 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
CKS1BP61024 ZEB2-234ENST00000636413 8984 ntTSL 5 BASIC10.36□□□□□ -0.75
CKS1BP61024 SLC5A11-211ENST00000569071 1919 ntTSL 5 BASIC10.36□□□□□ -0.75
CKS1BP61024 CELF4-218ENST00000591287 3757 ntAPPRIS ALT1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 PLEC-202ENST00000345136 14803 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC10.36□□□□□ -0.75
CKS1BP61024 USP35-204ENST00000530267 2419 ntTSL 2 BASIC10.36□□□□□ -0.75
CKS1BP61024 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC10.36□□□□□ -0.75
CKS1BP61024 SLC44A4-203ENST00000375562 2505 ntTSL 2 BASIC10.36□□□□□ -0.75
CKS1BP61024 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC10.36□□□□□ -0.75
CKS1BP61024 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
CKS1BP61024 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
CKS1BP61024 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CKS1BP61024 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 HLA-A-201ENST00000376802 1334 ntBASIC10.35□□□□□ -0.75
CKS1BP61024 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 BHMT2-201ENST00000255192 2050 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 JAM3-201ENST00000299106 3912 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 AC020658.7-201ENST00000624274 2442 ntBASIC10.35□□□□□ -0.75
CKS1BP61024 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 ACADL-201ENST00000233710 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 RPL13-201ENST00000311528 4498 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 GATAD2A-201ENST00000358713 5510 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms