Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CX3CR1P49238 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CX3CR1P49238 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC12.9□□□□□ -0.34
CX3CR1P49238 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC12.9□□□□□ -0.34
CX3CR1P49238 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC12.9□□□□□ -0.34
CX3CR1P49238 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC12.9□□□□□ -0.34
CX3CR1P49238 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 RN7SL752P-201ENST00000463779 287 ntBASIC12.9□□□□□ -0.34
CX3CR1P49238 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 AL391280.1-201ENST00000506969 1062 ntBASIC12.9□□□□□ -0.34
CX3CR1P49238 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC12.9□□□□□ -0.34
CX3CR1P49238 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC12.9□□□□□ -0.34
CX3CR1P49238 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
CX3CR1P49238 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CX3CR1P49238 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
CX3CR1P49238 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.35
CX3CR1P49238 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC12.9□□□□□ -0.35
CX3CR1P49238 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC12.9□□□□□ -0.35
CX3CR1P49238 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
CX3CR1P49238 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.35
CX3CR1P49238 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC011498.7-201ENST00000624986 2027 ntBASIC12.89□□□□□ -0.35
CX3CR1P49238 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC139712.1-201ENST00000378256 1875 ntBASIC12.89□□□□□ -0.35
CX3CR1P49238 AC107918.4-201ENST00000641966 3141 ntBASIC12.89□□□□□ -0.35
CX3CR1P49238 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
CX3CR1P49238 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
CX3CR1P49238 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CX3CR1P49238 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 MST1P2-201ENST00000457982 2291 ntBASIC12.89□□□□□ -0.35
CX3CR1P49238 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC098614.1-201ENST00000368528 745 ntBASIC12.89□□□□□ -0.35
CX3CR1P49238 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC12.89□□□□□ -0.35
CX3CR1P49238 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC011495.1-201ENST00000498085 584 ntBASIC12.89□□□□□ -0.35
CX3CR1P49238 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC12.89□□□□□ -0.35
CX3CR1P49238 AP001889.1-201ENST00000525414 633 ntBASIC12.89□□□□□ -0.35
CX3CR1P49238 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC12.89□□□□□ -0.35
CX3CR1P49238 ECM1P1-201ENST00000604092 1279 ntBASIC12.89□□□□□ -0.35
CX3CR1P49238 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC020910.6-201ENST00000623084 1459 ntBASIC12.89□□□□□ -0.35
CX3CR1P49238 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CX3CR1P49238 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC12.89□□□□□ -0.35
CX3CR1P49238 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CX3CR1P49238 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.89□□□□□ -0.35
CX3CR1P49238 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC12.89□□□□□ -0.35
CX3CR1P49238 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms