Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.06□□□□□ -0.48
CDX1P47902 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC12.05□□□□□ -0.48
CDX1P47902 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.05□□□□□ -0.48
CDX1P47902 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 DRD5P1-201ENST00000456605 1438 ntBASIC12.05□□□□□ -0.48
CDX1P47902 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 OS9-218ENST00000551035 2246 ntTSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC12.05□□□□□ -0.48
CDX1P47902 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
CDX1P47902 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC12.05□□□□□ -0.48
CDX1P47902 U91328.1-201ENST00000437528 223 ntBASIC12.05□□□□□ -0.48
CDX1P47902 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC12.05□□□□□ -0.48
CDX1P47902 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.05□□□□□ -0.48
CDX1P47902 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC12.05□□□□□ -0.48
CDX1P47902 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC12.05□□□□□ -0.48
CDX1P47902 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC12.05□□□□□ -0.48
CDX1P47902 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CDX1P47902 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.05□□□□□ -0.48
CDX1P47902 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC12.04□□□□□ -0.48
CDX1P47902 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.04□□□□□ -0.48
CDX1P47902 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
CDX1P47902 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
CDX1P47902 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
CDX1P47902 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
CDX1P47902 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
CDX1P47902 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC12.04□□□□□ -0.48
CDX1P47902 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CDX1P47902 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC12.04□□□□□ -0.48
CDX1P47902 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC12.04□□□□□ -0.48
CDX1P47902 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.04□□□□□ -0.48
CDX1P47902 PTP4A1P2-201ENST00000546033 454 ntBASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms