Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEDD4P46934 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEDD4P46934 AC067930.6-201ENST00000623257 4947 ntBASIC17.1■□□□□ 0.33
NEDD4P46934 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEDD4P46934 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
NEDD4P46934 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEDD4P46934 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEDD4P46934 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC17.09■□□□□ 0.33
NEDD4P46934 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.09■□□□□ 0.33
NEDD4P46934 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.09■□□□□ 0.33
NEDD4P46934 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 AL022313.4-201ENST00000562756 2046 ntBASIC17.09■□□□□ 0.33
NEDD4P46934 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
NEDD4P46934 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
NEDD4P46934 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
NEDD4P46934 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC17.09■□□□□ 0.33
NEDD4P46934 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC17.09■□□□□ 0.33
NEDD4P46934 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC17.09■□□□□ 0.33
NEDD4P46934 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.09■□□□□ 0.33
NEDD4P46934 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.09■□□□□ 0.33
NEDD4P46934 SPTLC1P5-201ENST00000450718 252 ntBASIC17.09■□□□□ 0.33
NEDD4P46934 AKR7A2P1-201ENST00000460134 915 ntBASIC17.09■□□□□ 0.33
NEDD4P46934 ARTN-209ENST00000479128 471 ntTSL 3 BASIC17.09■□□□□ 0.33
NEDD4P46934 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.09■□□□□ 0.33
NEDD4P46934 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.09■□□□□ 0.33
NEDD4P46934 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC17.09■□□□□ 0.33
NEDD4P46934 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
NEDD4P46934 AC244452.3-201ENST00000636814 210 ntBASIC17.09■□□□□ 0.33
NEDD4P46934 AC016397.2-201ENST00000624848 1985 ntBASIC17.09■□□□□ 0.33
NEDD4P46934 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
NEDD4P46934 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEDD4P46934 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
NEDD4P46934 LAP3P2-201ENST00000454686 1454 ntBASIC17.08■□□□□ 0.33
NEDD4P46934 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NEDD4P46934 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
NEDD4P46934 AHCYP4-201ENST00000419201 1315 ntBASIC17.08■□□□□ 0.33
NEDD4P46934 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC17.08■□□□□ 0.33
NEDD4P46934 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NEDD4P46934 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NEDD4P46934 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
NEDD4P46934 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC17.08■□□□□ 0.32
NEDD4P46934 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
NEDD4P46934 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 HNRNPA1P41-201ENST00000397777 928 ntBASIC17.08■□□□□ 0.32
NEDD4P46934 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.08■□□□□ 0.32
NEDD4P46934 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.08■□□□□ 0.32
NEDD4P46934 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC17.08■□□□□ 0.32
NEDD4P46934 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC17.08■□□□□ 0.32
NEDD4P46934 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.08■□□□□ 0.32
NEDD4P46934 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.08■□□□□ 0.32
NEDD4P46934 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NEDD4P46934 AP002353.1-201ENST00000528257 1599 ntBASIC17.08■□□□□ 0.32
NEDD4P46934 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NEDD4P46934 TUBBP5-203ENST00000508529 1334 ntBASIC17.07■□□□□ 0.32
NEDD4P46934 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
NEDD4P46934 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEDD4P46934 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEDD4P46934 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NEDD4P46934 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEDD4P46934 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
NEDD4P46934 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC17.07■□□□□ 0.32
NEDD4P46934 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEDD4P46934 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.07■□□□□ 0.32
NEDD4P46934 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEDD4P46934 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.07■□□□□ 0.32
NEDD4P46934 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NEDD4P46934 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEDD4P46934 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NEDD4P46934 JTB-202ENST00000356648 1040 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms