Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SOX3P41225 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SOX3P41225 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.83□□□□□ -0.19
SOX3P41225 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.83□□□□□ -0.19
SOX3P41225 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SOX3P41225 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SOX3P41225 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
SOX3P41225 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX3P41225 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX3P41225 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX3P41225 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 AC018442.1-201ENST00000421439 2061 ntBASIC13.83□□□□□ -0.2
SOX3P41225 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX3P41225 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
SOX3P41225 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
SOX3P41225 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.83□□□□□ -0.2
SOX3P41225 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.83□□□□□ -0.2
SOX3P41225 ACTBP11-201ENST00000436287 1126 ntBASIC13.83□□□□□ -0.2
SOX3P41225 Z93015.1-201ENST00000451718 390 ntBASIC13.83□□□□□ -0.2
SOX3P41225 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.83□□□□□ -0.2
SOX3P41225 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
SOX3P41225 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 PPY2P-201ENST00000582808 702 ntBASIC13.83□□□□□ -0.2
SOX3P41225 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.83□□□□□ -0.2
SOX3P41225 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX3P41225 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
SOX3P41225 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX3P41225 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
SOX3P41225 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX3P41225 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.83□□□□□ -0.2
SOX3P41225 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 AC011474.4-201ENST00000623523 2076 ntBASIC13.83□□□□□ -0.2
SOX3P41225 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SOX3P41225 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
SOX3P41225 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
SOX3P41225 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 AC023090.2-201ENST00000625182 2110 ntBASIC13.82□□□□□ -0.2
SOX3P41225 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.82□□□□□ -0.2
SOX3P41225 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
SOX3P41225 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 KRT8P4-201ENST00000509735 1454 ntBASIC13.82□□□□□ -0.2
SOX3P41225 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.82□□□□□ -0.2
SOX3P41225 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
SOX3P41225 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
SOX3P41225 FAM86HP-204ENST00000513466 959 ntBASIC13.82□□□□□ -0.2
SOX3P41225 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
SOX3P41225 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.82□□□□□ -0.2
SOX3P41225 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
SOX3P41225 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.82□□□□□ -0.2
SOX3P41225 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
SOX3P41225 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
SOX3P41225 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX3P41225 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms