Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RFC3P40938 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RFC3P40938 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RFC3P40938 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
RFC3P40938 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.45□□□□□ -0.26
RFC3P40938 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
RFC3P40938 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
RFC3P40938 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
RFC3P40938 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.44□□□□□ -0.26
RFC3P40938 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
RFC3P40938 TUBBP5-203ENST00000508529 1334 ntBASIC13.44□□□□□ -0.26
RFC3P40938 AL008718.2-201ENST00000609206 1313 ntBASIC13.44□□□□□ -0.26
RFC3P40938 OR2I1P-210ENST00000642037 4691 ntBASIC13.44□□□□□ -0.26
RFC3P40938 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
RFC3P40938 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.44□□□□□ -0.26
RFC3P40938 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 RN7SL774P-201ENST00000577467 290 ntBASIC13.44□□□□□ -0.26
RFC3P40938 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC13.44□□□□□ -0.26
RFC3P40938 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 AC138627.1-207ENST00000641560 1006 ntBASIC13.44□□□□□ -0.26
RFC3P40938 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.44□□□□□ -0.26
RFC3P40938 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 LINC01101-201ENST00000622953 1884 ntBASIC13.44□□□□□ -0.26
RFC3P40938 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
RFC3P40938 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
RFC3P40938 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
RFC3P40938 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.43□□□□□ -0.26
RFC3P40938 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.43□□□□□ -0.26
RFC3P40938 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
RFC3P40938 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
RFC3P40938 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
RFC3P40938 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.43□□□□□ -0.26
RFC3P40938 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.43□□□□□ -0.26
RFC3P40938 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC13.43□□□□□ -0.26
RFC3P40938 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.43□□□□□ -0.26
RFC3P40938 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC13.43□□□□□ -0.26
RFC3P40938 GCOM2-201ENST00000509133 1104 ntBASIC13.43□□□□□ -0.26
RFC3P40938 AC245884.6-201ENST00000515672 1067 ntBASIC13.43□□□□□ -0.26
RFC3P40938 SCARNA21-201ENST00000517026 139 ntBASIC13.43□□□□□ -0.26
RFC3P40938 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC13.43□□□□□ -0.26
RFC3P40938 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.43□□□□□ -0.26
RFC3P40938 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.43□□□□□ -0.26
RFC3P40938 AC131206.1-201ENST00000538078 1211 ntBASIC13.43□□□□□ -0.26
RFC3P40938 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.43□□□□□ -0.26
RFC3P40938 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RFC3P40938 AC005324.6-201ENST00000587972 613 ntBASIC13.43□□□□□ -0.26
RFC3P40938 AC097724.1-201ENST00000609581 426 ntBASIC13.43□□□□□ -0.26
RFC3P40938 MIR6720-201ENST00000611664 98 ntBASIC13.43□□□□□ -0.26
RFC3P40938 AC027601.3-201ENST00000622907 509 ntBASIC13.43□□□□□ -0.26
RFC3P40938 CU633904.3-201ENST00000624042 1029 ntBASIC13.43□□□□□ -0.26
RFC3P40938 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.43□□□□□ -0.26
RFC3P40938 AL805961.1-203ENST00000641078 1258 ntBASIC13.43□□□□□ -0.26
RFC3P40938 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 145 ms