Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGB1P09429 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
HMGB1P09429 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
HMGB1P09429 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
HMGB1P09429 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGB1P09429 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 REXO1L6P-201ENST00000603433 1515 ntBASIC17.21■□□□□ 0.35
HMGB1P09429 TK2-221ENST00000620035 5060 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
HMGB1P09429 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 CICP16-201ENST00000502609 2813 ntBASIC17.21■□□□□ 0.35
HMGB1P09429 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGB1P09429 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGB1P09429 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.21■□□□□ 0.35
HMGB1P09429 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 AL354877.1-201ENST00000424412 413 ntBASIC17.21■□□□□ 0.35
HMGB1P09429 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.21■□□□□ 0.35
HMGB1P09429 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
HMGB1P09429 RBM8B-201ENST00000555532 525 ntBASIC17.21■□□□□ 0.35
HMGB1P09429 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.21■□□□□ 0.35
HMGB1P09429 KLK3-207ENST00000595952 969 ntTSL 3 BASIC17.21■□□□□ 0.35
HMGB1P09429 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 COX11-210ENST00000639671 696 ntBASIC17.21■□□□□ 0.35
HMGB1P09429 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
HMGB1P09429 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGB1P09429 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 AC090643.2-201ENST00000623442 2029 ntBASIC17.21■□□□□ 0.35
HMGB1P09429 AMT-239ENST00000636865 1914 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGB1P09429 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB1P09429 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HMGB1P09429 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGB1P09429 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
HMGB1P09429 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC17.21■□□□□ 0.34
HMGB1P09429 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
HMGB1P09429 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
HMGB1P09429 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
HMGB1P09429 AL008718.2-201ENST00000609206 1313 ntBASIC17.21■□□□□ 0.34
HMGB1P09429 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
HMGB1P09429 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
HMGB1P09429 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
HMGB1P09429 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HMGB1P09429 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGB1P09429 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
HMGB1P09429 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGB1P09429 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.2■□□□□ 0.34
HMGB1P09429 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 HILS1-202ENST00000545329 423 ntBASIC17.2■□□□□ 0.34
HMGB1P09429 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 AC100827.2-201ENST00000563214 1194 ntBASIC17.2■□□□□ 0.34
HMGB1P09429 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 MIR4783-201ENST00000580343 82 ntBASIC17.2■□□□□ 0.34
HMGB1P09429 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms