Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.31□□□□□ -0.12
SIX3O95343 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.31□□□□□ -0.12
SIX3O95343 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.31□□□□□ -0.12
SIX3O95343 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.31□□□□□ -0.12
SIX3O95343 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.31□□□□□ -0.12
SIX3O95343 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.31□□□□□ -0.12
SIX3O95343 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.31□□□□□ -0.12
SIX3O95343 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.31□□□□□ -0.12
SIX3O95343 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
SIX3O95343 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
SIX3O95343 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.31□□□□□ -0.12
SIX3O95343 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
SIX3O95343 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
SIX3O95343 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SIX3O95343 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SIX3O95343 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
SIX3O95343 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SIX3O95343 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SIX3O95343 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SIX3O95343 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.3□□□□□ -0.12
SIX3O95343 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.3□□□□□ -0.12
SIX3O95343 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
SIX3O95343 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SIX3O95343 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SIX3O95343 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SIX3O95343 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.3□□□□□ -0.12
SIX3O95343 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.3□□□□□ -0.12
SIX3O95343 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 AGAP10P-201ENST00000454844 2418 ntBASIC14.3□□□□□ -0.12
SIX3O95343 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
SIX3O95343 AC005229.1-201ENST00000392885 409 ntBASIC14.3□□□□□ -0.12
SIX3O95343 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 AC004945.1-201ENST00000416738 983 ntBASIC14.3□□□□□ -0.12
SIX3O95343 TMEM14DP-201ENST00000422205 345 ntBASIC14.3□□□□□ -0.12
SIX3O95343 FAM197Y7-201ENST00000432892 766 ntBASIC14.3□□□□□ -0.12
SIX3O95343 TMEM198B-204ENST00000484016 896 ntBASIC14.3□□□□□ -0.12
SIX3O95343 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.3□□□□□ -0.12
SIX3O95343 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SIX3O95343 AC011495.1-201ENST00000498085 584 ntBASIC14.3□□□□□ -0.12
SIX3O95343 USP32P1-208ENST00000506594 1164 ntBASIC14.3□□□□□ -0.12
SIX3O95343 RNA5SP486-201ENST00000515961 83 ntBASIC14.3□□□□□ -0.12
SIX3O95343 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.3□□□□□ -0.12
SIX3O95343 SLC25A47P1-201ENST00000531577 414 ntBASIC14.3□□□□□ -0.12
SIX3O95343 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.3□□□□□ -0.12
SIX3O95343 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SIX3O95343 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.3□□□□□ -0.12
SIX3O95343 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.3□□□□□ -0.12
SIX3O95343 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.3□□□□□ -0.12
SIX3O95343 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.3□□□□□ -0.12
SIX3O95343 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.3□□□□□ -0.12
SIX3O95343 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.3□□□□□ -0.12
SIX3O95343 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.3□□□□□ -0.12
SIX3O95343 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.3□□□□□ -0.12
SIX3O95343 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
SIX3O95343 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.3□□□□□ -0.12
SIX3O95343 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.3□□□□□ -0.12
SIX3O95343 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SIX3O95343 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.3□□□□□ -0.12
SIX3O95343 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SIX3O95343 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SIX3O95343 AC105206.1-202ENST00000314927 2368 ntBASIC14.3□□□□□ -0.12
SIX3O95343 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms