Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
MBD4O95243 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC17.34■□□□□ 0.37
MBD4O95243 NCR3-202ENST00000376071 541 ntTSL 5 BASIC17.34■□□□□ 0.37
MBD4O95243 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
MBD4O95243 TSPY25P-201ENST00000429463 745 ntBASIC17.34■□□□□ 0.37
MBD4O95243 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.34■□□□□ 0.37
MBD4O95243 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
MBD4O95243 AP002353.1-201ENST00000528257 1599 ntBASIC17.34■□□□□ 0.37
MBD4O95243 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.34■□□□□ 0.37
MBD4O95243 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.34■□□□□ 0.37
MBD4O95243 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 AC091812.3-201ENST00000621362 345 ntBASIC17.34■□□□□ 0.37
MBD4O95243 CU633904.3-201ENST00000624042 1029 ntBASIC17.34■□□□□ 0.37
MBD4O95243 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.34■□□□□ 0.37
MBD4O95243 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
MBD4O95243 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC17.34■□□□□ 0.37
MBD4O95243 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MBD4O95243 AC005912.2-201ENST00000619492 2400 ntBASIC17.33■□□□□ 0.37
MBD4O95243 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
MBD4O95243 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MBD4O95243 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
MBD4O95243 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.33■□□□□ 0.37
MBD4O95243 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
MBD4O95243 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.33■□□□□ 0.37
MBD4O95243 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MBD4O95243 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MBD4O95243 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC17.33■□□□□ 0.37
MBD4O95243 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC17.33■□□□□ 0.36
MBD4O95243 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 LBH-202ENST00000401506 485 ntTSL 3 BASIC17.33■□□□□ 0.36
MBD4O95243 PDIA3P2-201ENST00000428073 158 ntBASIC17.33■□□□□ 0.36
MBD4O95243 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC17.33■□□□□ 0.36
MBD4O95243 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.33■□□□□ 0.36
MBD4O95243 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC17.33■□□□□ 0.36
MBD4O95243 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.33■□□□□ 0.36
MBD4O95243 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC17.33■□□□□ 0.36
MBD4O95243 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC17.33■□□□□ 0.36
MBD4O95243 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC17.33■□□□□ 0.36
MBD4O95243 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC17.33■□□□□ 0.36
MBD4O95243 AC104506.1-201ENST00000609247 429 ntBASIC17.33■□□□□ 0.36
MBD4O95243 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC17.33■□□□□ 0.36
MBD4O95243 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.33■□□□□ 0.36
MBD4O95243 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.33■□□□□ 0.36
MBD4O95243 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
MBD4O95243 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.36
MBD4O95243 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
MBD4O95243 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MBD4O95243 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.32■□□□□ 0.36
MBD4O95243 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
MBD4O95243 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
MBD4O95243 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 BX640514.1-201ENST00000583223 1918 ntBASIC17.32■□□□□ 0.36
MBD4O95243 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.32■□□□□ 0.36
MBD4O95243 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 AC092580.1-201ENST00000433998 658 ntBASIC17.32■□□□□ 0.36
MBD4O95243 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.32■□□□□ 0.36
MBD4O95243 AC245884.6-201ENST00000515672 1067 ntBASIC17.32■□□□□ 0.36
MBD4O95243 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.32■□□□□ 0.36
MBD4O95243 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.32■□□□□ 0.36
MBD4O95243 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC17.32■□□□□ 0.36
MBD4O95243 AC021016.3-201ENST00000608367 477 ntBASIC17.32■□□□□ 0.36
MBD4O95243 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MBD4O95243 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms