Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 TMBIM7P-202ENST00000641474 1516 ntBASIC13.76□□□□□ -0.21
LDB3O75112 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 AL008718.2-201ENST00000609206 1313 ntBASIC13.76□□□□□ -0.21
LDB3O75112 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.76□□□□□ -0.21
LDB3O75112 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC13.76□□□□□ -0.21
LDB3O75112 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.76□□□□□ -0.21
LDB3O75112 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.76□□□□□ -0.21
LDB3O75112 RNMTL1P1-201ENST00000454103 560 ntBASIC13.76□□□□□ -0.21
LDB3O75112 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.76□□□□□ -0.21
LDB3O75112 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LDB3O75112 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.76□□□□□ -0.21
LDB3O75112 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.76□□□□□ -0.21
LDB3O75112 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.76□□□□□ -0.21
LDB3O75112 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
LDB3O75112 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
LDB3O75112 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LDB3O75112 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
LDB3O75112 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LDB3O75112 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LDB3O75112 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
LDB3O75112 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.76□□□□□ -0.21
LDB3O75112 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LDB3O75112 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
LDB3O75112 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
LDB3O75112 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LDB3O75112 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.75□□□□□ -0.21
LDB3O75112 AL157407.1-201ENST00000435784 904 ntBASIC13.75□□□□□ -0.21
LDB3O75112 AL645933.1-201ENST00000440087 609 ntBASIC13.75□□□□□ -0.21
LDB3O75112 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.75□□□□□ -0.21
LDB3O75112 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.75□□□□□ -0.21
LDB3O75112 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.75□□□□□ -0.21
LDB3O75112 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.75□□□□□ -0.21
LDB3O75112 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 SORD2P-201ENST00000558556 1069 ntBASIC13.75□□□□□ -0.21
LDB3O75112 AC027237.1-201ENST00000560942 655 ntBASIC13.75□□□□□ -0.21
LDB3O75112 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.75□□□□□ -0.21
LDB3O75112 AC005962.1-201ENST00000584100 773 ntBASIC13.75□□□□□ -0.21
LDB3O75112 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LDB3O75112 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.75□□□□□ -0.21
LDB3O75112 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
LDB3O75112 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.75□□□□□ -0.21
LDB3O75112 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LDB3O75112 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms