Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 AC134312.5-201ENST00000568031 1313 ntBASIC12.88□□□□□ -0.35
RHBDD3Q9Y3P4 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 ACTG1P3-201ENST00000431775 1114 ntBASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 AC007969.1-201ENST00000433675 447 ntBASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 TDH-203ENST00000531764 1110 ntBASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 AC138761.1-201ENST00000584393 385 ntBASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 RPSAP52-203ENST00000622976 1023 ntBASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
RHBDD3Q9Y3P4 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 RN7SL832P-201ENST00000607781 1756 ntBASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 WARS-203ENST00000358655 2466 ntTSL 2 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC12.86□□□□□ -0.35
RHBDD3Q9Y3P4 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms