Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 STK40-201ENST00000359297 4837 ntTSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AC126915.1-201ENST00000522847 1038 ntBASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AC005730.2-201ENST00000564549 1184 ntBASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AC007191.1-201ENST00000623179 2995 ntBASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AC015688.4-201ENST00000580780 1647 ntBASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 AC244394.1-201ENST00000435000 1665 ntBASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 AC006033.1-201ENST00000440505 426 ntBASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 AC012441.2-201ENST00000444843 739 ntBASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 AC004898.1-201ENST00000451057 766 ntBASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 AC005089.1-201ENST00000619486 2241 ntBASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 GRK6P1-201ENST00000400595 1711 ntBASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TRIM39Q9HCM9 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms