Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC009884.2-201ENST00000603110 324 ntBASIC17.13■□□□□ 0.33
NUP88Q99567 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.13■□□□□ 0.33
NUP88Q99567 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
NUP88Q99567 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
NUP88Q99567 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.13■□□□□ 0.33
NUP88Q99567 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC17.13■□□□□ 0.33
NUP88Q99567 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
NUP88Q99567 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
NUP88Q99567 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NUP88Q99567 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
NUP88Q99567 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.12■□□□□ 0.33
NUP88Q99567 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
NUP88Q99567 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.12■□□□□ 0.33
NUP88Q99567 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 RN7SKP214-201ENST00000364208 315 ntBASIC17.12■□□□□ 0.33
NUP88Q99567 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC17.12■□□□□ 0.33
NUP88Q99567 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC17.12■□□□□ 0.33
NUP88Q99567 AL008707.1-201ENST00000422498 534 ntBASIC17.12■□□□□ 0.33
NUP88Q99567 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC17.12■□□□□ 0.33
NUP88Q99567 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC17.12■□□□□ 0.33
NUP88Q99567 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.12■□□□□ 0.33
NUP88Q99567 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.12■□□□□ 0.33
NUP88Q99567 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC17.12■□□□□ 0.33
NUP88Q99567 AL133499.1-201ENST00000596207 608 ntBASIC17.12■□□□□ 0.33
NUP88Q99567 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC17.12■□□□□ 0.33
NUP88Q99567 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC17.12■□□□□ 0.33
NUP88Q99567 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
NUP88Q99567 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.12■□□□□ 0.33
NUP88Q99567 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
NUP88Q99567 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NUP88Q99567 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC17.12■□□□□ 0.33
NUP88Q99567 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.12■□□□□ 0.33
NUP88Q99567 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.12■□□□□ 0.33
NUP88Q99567 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 KRT8P19-201ENST00000551916 1455 ntBASIC17.12■□□□□ 0.33
NUP88Q99567 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NUP88Q99567 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 TMBIM7P-202ENST00000641474 1516 ntBASIC17.11■□□□□ 0.33
NUP88Q99567 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.11■□□□□ 0.33
NUP88Q99567 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
NUP88Q99567 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.11■□□□□ 0.33
NUP88Q99567 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.11■□□□□ 0.33
NUP88Q99567 AC144522.1-201ENST00000625111 1658 ntBASIC17.11■□□□□ 0.33
NUP88Q99567 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
NUP88Q99567 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.11■□□□□ 0.33
NUP88Q99567 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
NUP88Q99567 AC005089.1-201ENST00000619486 2241 ntBASIC17.11■□□□□ 0.33
NUP88Q99567 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.11■□□□□ 0.33
NUP88Q99567 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.11■□□□□ 0.33
NUP88Q99567 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.11■□□□□ 0.33
NUP88Q99567 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
NUP88Q99567 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 ISCA2P1-201ENST00000425548 448 ntBASIC17.11■□□□□ 0.33
NUP88Q99567 AL596276.2-201ENST00000447525 331 ntBASIC17.11■□□□□ 0.33
NUP88Q99567 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.11■□□□□ 0.33
NUP88Q99567 AC006122.1-201ENST00000493323 440 ntBASIC17.11■□□□□ 0.33
NUP88Q99567 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC17.11■□□□□ 0.33
NUP88Q99567 AC134698.3-201ENST00000523880 214 ntBASIC17.11■□□□□ 0.33
NUP88Q99567 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.11■□□□□ 0.33
NUP88Q99567 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
NUP88Q99567 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
NUP88Q99567 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC17.11■□□□□ 0.33
NUP88Q99567 CDK7-214ENST00000626796 358 ntTSL 5 BASIC17.11■□□□□ 0.33
NUP88Q99567 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.11■□□□□ 0.33
NUP88Q99567 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.11■□□□□ 0.33
NUP88Q99567 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NUP88Q99567 MRPL37P1-201ENST00000592451 1337 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms