Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 AC044849.1-201ENST00000519737 1188 ntBASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 AC008805.1-201ENST00000590892 364 ntBASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 RN7SL769P-201ENST00000469386 295 ntBASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 AC090164.2-201ENST00000611487 516 ntBASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 AC092299.1-201ENST00000632679 757 ntBASIC14.84□□□□□ -0.03
SHROOM3Q8TF72 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
SHROOM3Q8TF72 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 RPL17P11-201ENST00000417593 544 ntBASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 NKAIN1P1-201ENST00000435754 582 ntBASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 MIR3619-201ENST00000579667 83 ntBASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 NDUFV2P1-201ENST00000596415 907 ntBASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 AC091271.1-201ENST00000611877 1162 ntBASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SHROOM3Q8TF72 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms