Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 AC103988.2-201ENST00000561804 725 ntBASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 AJ011932.1-201ENST00000621707 465 ntBASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 KRT8P24-201ENST00000560290 1559 ntBASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 AC015688.4-201ENST00000580780 1647 ntBASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 CICP8-201ENST00000455800 2813 ntBASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CCDC54Q8NEL0 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CCDC54Q8NEL0 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CCDC54Q8NEL0 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CCDC54Q8NEL0 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
CCDC54Q8NEL0 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CCDC54Q8NEL0 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CCDC54Q8NEL0 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC12.83□□□□□ -0.35
CCDC54Q8NEL0 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
CCDC54Q8NEL0 TDG-209ENST00000544861 1387 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 Z82170.1-201ENST00000625081 3192 ntBASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 GALT-202ENST00000450095 1280 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 FTLP10-202ENST00000505798 471 ntBASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 CLUHP6-201ENST00000580789 941 ntBASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 AC138761.1-201ENST00000584393 385 ntBASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 AL132655.2-201ENST00000596276 594 ntBASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 AP001002.3-201ENST00000623482 206 ntBASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 CU634019.7-201ENST00000624153 1185 ntBASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 FP236241.2-201ENST00000624906 1185 ntBASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 AC007541.1-201ENST00000570282 1469 ntBASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
CCDC54Q8NEL0 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC54Q8NEL0 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
CCDC54Q8NEL0 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
CCDC54Q8NEL0 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC12.82□□□□□ -0.36
CCDC54Q8NEL0 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CCDC54Q8NEL0 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CCDC54Q8NEL0 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms