Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 AC107308.1-201ENST00000615897 301 ntBASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AL121723.1-201ENST00000445194 1519 ntBASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 KRT18P64-201ENST00000434946 1219 ntBASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 MEIS3P1-201ENST00000495167 958 ntBASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AC004066.1-201ENST00000502488 802 ntBASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
DEPDC4Q8N2C3 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 CU639417.3-201ENST00000624240 1404 ntBASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 SLC7A15P-201ENST00000424028 1363 ntBASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms